View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_2 (Length: 474)
Name: NF2779_low_2
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 25 - 461
Target Start/End: Original strand, 44937038 - 44937478
Alignment:
| Q |
25 |
tctatgactttttaaatagaaagacctaacaaagtgttcagagacagcaccagcaccaaggcgaccgatgaaattgcaaaagccgaagactggcaacaat |
124 |
Q |
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| T |
44937038 |
tctatgactttttaaatagaaagacctaacaaagtgtccagagacagcaccagcacctagacgatcgataaaattgcaaaagcagaagactgacaacaat |
44937137 |
T |
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| Q |
125 |
atggctgtatcttctacacccaaagcaactccaa----------attattgagaaccactcattatggaaactaagacagatggaggaaacagaatcaat |
214 |
Q |
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| T |
44937138 |
atggctgtatcttcaatacccaaagcaactccaatttgagccaaattattgagaaccactcattatggaaactaagacagatggaggaaacagaatcaat |
44937237 |
T |
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| Q |
215 |
aattgaaacaatgttgcttagtattgtggtcataacaggatatgtggctcgaattgcttgtgtgaaaataaaatggatatatatgttgtaccgaagacga |
314 |
Q |
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| T |
44937238 |
aattgaaacaatgttgcttagtattgtggtcataacaggatatgtggctcgaa--gcttgtgtgaaaataaaatggatat----gttgtaccgaagagta |
44937331 |
T |
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| Q |
315 |
atgcatatactgaaacactaatcatgttctccacatattatctatctctacataaaattggaataaaaaccacaccagtctacaaatagaaagagaatca |
414 |
Q |
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| T |
44937332 |
atgcatatactgaaacactaatcatgttctccacatattttctatctctacataaaattggaataaaaaccacaccagtctacaaatagaaagagaatca |
44937431 |
T |
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| Q |
415 |
actttgaagataaagcaacaatattcataatcatttaatactttctt |
461 |
Q |
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| T |
44937432 |
actttgaagataaagcaacaatattcataatcatttaatactttctt |
44937478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 44910945 - 44911079
Alignment:
| Q |
23 |
agtctatgactttttaaatagaaagacctaacaaagtgttcagagacagcaccagcaccaaggcgaccgatgaaattgcaaaagccgaagactggcaaca |
122 |
Q |
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| T |
44910945 |
agtctattacttgttaaata-agatacctaacaaagtgttcagaaacagcaccagcacctagacgaccgataaaattgcaaaagctgaagattgagagca |
44911043 |
T |
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| Q |
123 |
atatggctgtatcttctacacccaaagcaactccaa |
158 |
Q |
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| T |
44911044 |
atatggttgtatcttctacacccaaagcagctccaa |
44911079 |
T |
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