View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_22 (Length: 250)
Name: NF2779_low_22
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27272006 - 27272244
Alignment:
| Q |
1 |
tatttttaattttaaaaatgaaatgtaatatatatttaatgctacaaattataaacgatacccccactatttgaattttctggctccgctactggtttca |
100 |
Q |
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| T |
27272006 |
tatttttgatttaaaaaatataatataatatatatttaatgctacaaattatatacgatacctccactatttgaattttctgattccgctactcctttca |
27272105 |
T |
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| Q |
101 |
ttaccactgtttttattctattgaatcacactaattccattgctgatgtgcctctacatattcatgaatcggttatgcacaaattctaccatagtaatat |
200 |
Q |
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| T |
27272106 |
ttgccactgtttttattctattgaatcacactaattccattgctgatgtgcctttacatattcatgaatcggttatgcacaaattctaccatagtaatat |
27272205 |
T |
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| Q |
201 |
tattaattggctacttgttgcccttttccataacttcat |
239 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |
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| T |
27272206 |
tatcaattggctacttgttgcccttttccataacttcat |
27272244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10710968 - 10710897
Alignment:
| Q |
1 |
tatttttaattttaaaaatgaaatgtaatatatatttaatgctacaaattataaacgata--cccccactatt |
71 |
Q |
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| T |
10710968 |
tatttctactttaaaaaatgaaatgtaatatatattt-atgctacaaattatatatgatatgcccccactatt |
10710897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 36925191 - 36925274
Alignment:
| Q |
9 |
attttaaaaatgaaatgtaatatatatttaatgctacaaattataaacgatacccccactatttgaattttctggctccgctact |
93 |
Q |
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| T |
36925191 |
atttaaaaaatgaaatgtaatatatatttaatgctacaaa-tacatacgatgcccccactatttgaattttctggctccgctact |
36925274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42553970 - 42553918
Alignment:
| Q |
1 |
tatttttaattttaaaaatgaaatgtaatatatatttaatgctacaaattata |
53 |
Q |
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| T |
42553970 |
tattttttcttttaaaaacgaaatgtaatatatatcaaatgctacaaattata |
42553918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 26648008 - 26648079
Alignment:
| Q |
1 |
tatttttaattttaaaaatgaaatgtaatatatatttaatgctacaaattataaacgata--cccccactatt |
71 |
Q |
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||||| || ||| |||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||| |
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| T |
26648008 |
tatttctactttaaaaaatgaaatgtaatatatattt-atgctacaaattatatatgatatgcccccactatt |
26648079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 32500619 - 32500658
Alignment:
| Q |
14 |
aaaaatgaaatgtaatatatatttaatgctacaaattata |
53 |
Q |
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|||||| |||||||||||||||| |||||||||||||||| |
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| T |
32500619 |
aaaaataaaatgtaatatatattcaatgctacaaattata |
32500658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 6495873 - 6495912
Alignment:
| Q |
14 |
aaaaatgaaatgtaatatatatttaatgctacaaattata |
53 |
Q |
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| T |
6495873 |
aaaaatgaaatataatatatatttaatgttacaaattata |
6495912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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