View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_28 (Length: 238)
Name: NF2779_low_28
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 2289578 - 2289366
Alignment:
| Q |
17 |
aatttcagcaagtgatgaatagcaaacaattcaaggtgatgaacaggtgaagaaaatggttgataatgaaagtgttatttggagctttgctcaatgaagt |
116 |
Q |
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| T |
2289578 |
aatttcagcaagtgatgaatagcaaacagttcaaggtgatgaacaggtgaagaaaatggttgataatgaaagtgttatttggagctttgctcaatgaagt |
2289479 |
T |
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| Q |
117 |
agcttagtatcactagttaatacttggtgcttc-----nnnnnnnnngcaaagcttggtagttaggttcttatatgcactttatcaatacttagtgccct |
211 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||| || || ||||||||||||||||||||||| ||||||| |
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| T |
2289478 |
agcttagtatcactagttaatacttagtgcttctttttttttttgttgcaaagcttggtagtaagctttttatatgcactttatcaatactttgtgccct |
2289379 |
T |
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| Q |
212 |
taacttttctgtg |
224 |
Q |
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|||||||| |||| |
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| T |
2289378 |
taacttttttgtg |
2289366 |
T |
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