View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_3 (Length: 472)
Name: NF2779_low_3
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 7 - 460
Target Start/End: Complemental strand, 19756589 - 19756136
Alignment:
| Q |
7 |
attggttattttattcggtaccctttcattttttaatatttcactttcatatgtataatatggttgaatcatgtccagggagaaacctacacttgcagtt |
106 |
Q |
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| T |
19756589 |
attggttattttattcaataccctttcattctttaatatttcactttcatatgtataatatggttgaatcatgtccagggagaaacctacacttgcagtt |
19756490 |
T |
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| Q |
107 |
tctaaccaagtaagtgagaatgttgctgctccaaagagaaatcaaaatatgaacaactcaatgaaaaaggtttaaatatctaaatcaagtcatttatttt |
206 |
Q |
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| T |
19756489 |
tctaaccaagtaagtgagaatgttgctgctccaaagagaaatcaaaatatgaacatctcattcaaaaaggtttaaatatctaaataaagtcatttatttt |
19756390 |
T |
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| Q |
207 |
attatttaattttaaactaacattggcaacaacttgcattgcagcaaccagaactaatgttgcgtggatatgaacgccctttaaagagggttattgaaat |
306 |
Q |
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| T |
19756389 |
attatttaattttaaaccaacattgacaacaacttaaattgcagcaaccagaagaaatgttgcgtggatatgaacgccctttaaagagggttattgaaat |
19756290 |
T |
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| Q |
307 |
tggacatccttccttattgaaacatcaaaaggtaataaattctcttatacaccacacatacatcataaatgctatacaatcgttagtgttgatcatattg |
406 |
Q |
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| T |
19756289 |
tggacatccttccttattgaaagatcaaaaggtaataagttctcttatacaccacacatacatcataaatgctatacaatccttagtgttgatcatattg |
19756190 |
T |
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| Q |
407 |
gcaaggattcaacacatacatcataatgaagtaagtttggactcttttgttgat |
460 |
Q |
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| T |
19756189 |
gcaagaattcaacacatacatcataatgaagtgagttcggattcttttgttgat |
19756136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 443
Target Start/End: Complemental strand, 24134335 - 24133916
Alignment:
| Q |
30 |
tttcattttttaatatttcactttcatatgtata------atatggttgaatcatgtccagggagaaacctacacttgcagtttctaaccaagtaagtga |
123 |
Q |
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| T |
24134335 |
tttcaatttttaatatttcactttcatatgtatatgtataatatggttgaatcatgtctagggagaaacctacacatgcagtttctaacctggtcagtga |
24134236 |
T |
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| Q |
124 |
gaatgttgctgctccaaagagaaatcaaaatatgaacaactcaatgaaaaaggtttaaatatctaaatcaagtcatttattttattatttaattttaaac |
223 |
Q |
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| T |
24134235 |
gagtgttgctgctcctaagagaaatcaaaatatgaacatctcactgaaaaaggtagtaatctctaaatcaagcaatttattttattgattaattttaaac |
24134136 |
T |
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| Q |
224 |
taacattggcaacaacttgcattgcagcaaccagaactaatgttgcgtggatatgaacgccctttaaagagggttattgaaattggacatccttccttat |
323 |
Q |
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| T |
24134135 |
taacattggcaacaacttgtattgcagcaaccagaagaaatgctgcatggatatgaacgccctataaagagagttattgaaattggacattcttcctcat |
24134036 |
T |
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| Q |
324 |
tgaaacatcaaaaggtaataaattctcttatacaccacacatacatcataaatgctatacaatcgttagtgttgatcatattggcaaggattcaacacat |
423 |
Q |
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| T |
24134035 |
tgaataatcaaaaggtattaacttctcttgaacactacacaaacatcatcaatgttataagattgtcaatgttgatcctattggcaaggattcaacacat |
24133936 |
T |
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| Q |
424 |
acatcataatgaagtaagtt |
443 |
Q |
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|||||||||| |||| |||| |
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| T |
24133935 |
acatcataattaagtgagtt |
24133916 |
T |
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