View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_33 (Length: 216)
Name: NF2779_low_33
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_33 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 27526650 - 27526832
Alignment:
| Q |
18 |
aagaattgagtttgcatcttgatttcatgatataatttatgactcaagatattcattaaacattttaactcaacagatcctgacatgcttgaggttggaa |
117 |
Q |
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| T |
27526650 |
aagaattgagtttgcatcttgatttcatgatataatttatgactcaagatattcattaaatattttaactcaacagatcctgacatgcttgaggttggaa |
27526749 |
T |
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| Q |
118 |
atggagggatgacaaaaaatgaatatattgttcacttcagtttgtgggccatttcaaaggttctatcattctcttgtcttcat |
200 |
Q |
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| T |
27526750 |
atggagggatgacaaaaaatgaatatattgttcacttcagtttgtgggccatttcaaaggttctatcattctcttgtcttcat |
27526832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 27532311 - 27532476
Alignment:
| Q |
25 |
gagtttgcatcttgatttcatgatataatttatgactcaagatattcattaaacattttaactcaacagatcctgacatgcttgaggttggaaatggagg |
124 |
Q |
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| T |
27532311 |
gagtttgcatattgatttcatgatacaatttatgagtcgatttattcattaaacattctaactcgacagatcctgatatgcttgaggttggaaatggagg |
27532410 |
T |
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| Q |
125 |
gatgacaaaaaatgaatatattgttcacttcagtttgtgggccatttcaaaggttctatcattctc |
190 |
Q |
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| T |
27532411 |
gatgacaaaaaatgagtatatcgttcacttcagtttgtgggccatttcaaaggttcgattattctc |
27532476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0279 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 20606 - 20712
Alignment:
| Q |
99 |
gacatgcttgagg-ttggaaatggagggatgac--aaaaaatgaatatattgttca-cttcagtttgtgggcc-atttcaaaggttctatcattctcttg |
193 |
Q |
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| T |
20606 |
gacatgcttgagggttggaaatggggggcagaccaaaaaaagggatatattgttcaacttcagtttgtgggcccatgtcaaaggttctatcattctctgg |
20705 |
T |
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| Q |
194 |
tcttcat |
200 |
Q |
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| T |
20706 |
tcttcat |
20712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 24883685 - 24883727
Alignment:
| Q |
90 |
acagatcctgacatgcttgaggttggaaatggagggatgacaa |
132 |
Q |
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| T |
24883685 |
acagatcctgacatgcttgaagttggaaatggaggtatgacaa |
24883727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 32590259 - 32590219
Alignment:
| Q |
92 |
agatcctgacatgcttgaggttggaaatggagggatgacaa |
132 |
Q |
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| T |
32590259 |
agatcctgatatgcttgaagttggaaatggaggcatgacaa |
32590219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 32600707 - 32600667
Alignment:
| Q |
92 |
agatcctgacatgcttgaggttggaaatggagggatgacaa |
132 |
Q |
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| T |
32600707 |
agatcctgatatgcttgaagttggaaatggaggcatgacaa |
32600667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 34593853 - 34593815
Alignment:
| Q |
92 |
agatcctgacatgcttgaggttggaaatggagggatgac |
130 |
Q |
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| T |
34593853 |
agatcctgacatgcttgaggttgggaatggaggcatgac |
34593815 |
T |
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