View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_34 (Length: 204)
Name: NF2779_low_34
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 5921913 - 5922018
Alignment:
| Q |
85 |
aagcaacaaatacacagagaacgaagcttgaagacgaagcaatcaagcacaaaaatgaagaatcaagcacagaatcatgaagattcagtgaagaagatga |
184 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5921913 |
aagcaacaaatacatagagaacgaagcttgaagacgaagcaatcaggcacaaaaatgaagaatcaagcacataatcatgaagattcagtgaagaagatga |
5922012 |
T |
|
| Q |
185 |
aggaga |
190 |
Q |
| |
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|||||| |
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| T |
5922013 |
aggaga |
5922018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 20326168 - 20326269
Alignment:
| Q |
84 |
gaagcaacaaatacacagagaacgaagcttgaagacgaagcaatcaagcacaaaaatga-agaatcaagcacagaatcatgaagattcagtgaagaagat |
182 |
Q |
| |
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|||||||||||| | |||| ||| |||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||| |
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| T |
20326168 |
gaagcaacaaattctcagaaaacaaagcttgaagacgaagcaatcaagcacaaaaaaaagagaatcaatcacagaatcatgaagattcaatgaagaagat |
20326267 |
T |
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| Q |
183 |
ga |
184 |
Q |
| |
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|| |
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|
| T |
20326268 |
ga |
20326269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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