View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_4 (Length: 405)
Name: NF2779_low_4
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 400
Target Start/End: Complemental strand, 10017507 - 10017119
Alignment:
| Q |
12 |
agaaattacattggatcacaccctgattacatttatgacaaaggcattaagagatgacaagataagaatagtgaataaagtgatacacaaagtaatgaaa |
111 |
Q |
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| T |
10017507 |
agaaattacattggatcacaccctgattacatttatgacaaaggcattaagagatgacaagataagaatagtgaataaagtgatacacaaagtaatgaaa |
10017408 |
T |
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| Q |
112 |
ataatttgcttaattgctttgaatttttcaaagatttagtatcattattattagatctatcttctcttttcacttccatattctgatttataacttcttg |
211 |
Q |
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| T |
10017407 |
ataatttgcttaattgctttgaatttttcaaagatttagtatcattattattagatctatcttctcttttcacttccatattctgatttataacttcttg |
10017308 |
T |
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| Q |
212 |
tccttcctatgagcatttccttatgatccaagttcaacatgcttcctggaatactttcttctttgactcctcttataaccatcnnnnnnncaaagtccaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10017307 |
tccttcctatgagcatttccttatgatccaagttcaacatgcttcctggaatactttcttctttgactcctcttataaccatctttttttcaaagtccaa |
10017208 |
T |
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| Q |
312 |
gcataacttatcatctaaccttttagttttgtgttgacccttttctctactctcagcaagagaggttcttcttgtgatttcttctctct |
400 |
Q |
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| T |
10017207 |
gcataacttatcatctaaccttttagttttgtgttgacccttttctctactctcagcaagagaggttcttcttgtgatttcttctctct |
10017119 |
T |
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