View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_6 (Length: 378)
Name: NF2779_low_6
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 67 - 338
Target Start/End: Complemental strand, 40079758 - 40079486
Alignment:
| Q |
67 |
atacatgtgtacatcatgttattgacgtgatataaatcatgttgagaacatttgttacatgtattcatttctcatctcttaccttttgctcattttagaa |
166 |
Q |
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| T |
40079758 |
atacatgtgtacatcatgttattgacgtgatataaatcatgttgagaacatttgttacatgtattcatttctcatctgttaccttttgctcattttagaa |
40079659 |
T |
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| Q |
167 |
ttgggttaatgattt-gaggcaactattgcgcgcgagaaaaggaattgggggaattttcctccatgatttttccgtccatttgacacaaatatatttgaa |
265 |
Q |
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| T |
40079658 |
ttgggttaatgattttgaggcaactattgcgcgagagaaaaggaattgggggaattttcctccatgattttcccgtccatttgacacaaatatatttgaa |
40079559 |
T |
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| Q |
266 |
gatcatgtgtccattcatattctctaccacgcaatattcgtatcaaatggtttaacataattttaaaatcaac |
338 |
Q |
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| T |
40079558 |
ggtcatgtgcccattcatattctctaccacgcaatattcgtatcaaatggtttaacataattttaaaatcaac |
40079486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 40079836 - 40079777
Alignment:
| Q |
24 |
gtctcacataggttgctttttattcacacattatgttgcaaacatacatgtgtacatcat |
83 |
Q |
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| T |
40079836 |
gtctcacataggttactttttattcacacattctgttgcaaacatacatgtgtacatcat |
40079777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 367
Target Start/End: Complemental strand, 40079465 - 40079437
Alignment:
| Q |
339 |
taaatcctaacactcattcgacacttcat |
367 |
Q |
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| T |
40079465 |
taaatcctaacactcattcgacacttcat |
40079437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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