View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2779_low_8 (Length: 366)
Name: NF2779_low_8
Description: NF2779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2779_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 47493750 - 47494067
Alignment:
| Q |
19 |
taaacagccaacatcatcctgacgaactcttgataatcaacgagaccgtcaccatccagatcagccgttttgatcatctgttccagttcttcgtctgtca |
118 |
Q |
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| T |
47493750 |
taaacagtcaacatcatcctgacgaactcttgataatcaacgaggccgtcaccatccagatcagccgttttgatcatctgctccagttcttcgtctgtca |
47493849 |
T |
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| Q |
119 |
ccttttctccgatggtactcaatactgacctcaactgggctcacacgtaatatcaattatatagttcaatattacggtacgacaaaacaaattatatatg |
218 |
Q |
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| T |
47493850 |
ccttttctccgatggtactcaatactgacctcaactgggctcacacgtaatatcaattatatagttc---attacggtacaacaaaacaaattatatatg |
47493946 |
T |
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| Q |
219 |
ttgaattaattatacctcactgggtgatatgtaaccatctttatctttgtcgaacaccctgaaagcttccttaaattcctcttctgcttcactttccttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47493947 |
ttgaattaattatacctcactgggtgatatgtaaccatctttatctttgtcgaacaccctgaaagcttccttaaattcctcttccgcttcactttccttt |
47494046 |
T |
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| Q |
319 |
ttcgtacataaaaattcacaa |
339 |
Q |
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| T |
47494047 |
ttcgtacatacaaattcacaa |
47494067 |
T |
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