View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2780-Insertion-2 (Length: 1004)
Name: NF2780-Insertion-2
Description: NF2780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2780-Insertion-2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 812; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 812; E-Value: 0
Query Start/End: Original strand, 8 - 949
Target Start/End: Complemental strand, 47057751 - 47056807
Alignment:
| Q |
8 |
aacacaagaatccgatcctgaatcatttgccattttcaaattaggaatatagtcttgaagcatatctgcaacatccttgaaccttctcagacatagtaga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47057751 |
aacacaagaatccgatcctgaatcatttgccattttcaaattaggaatatagtcttgaagcatatctgcaacatccttgaaccttctcagacatagtaga |
47057652 |
T |
|
| Q |
108 |
gacctcgctcgaagctcaagggcttgatcagagcatggagatatagccaaagcctcatcaagaagactcaaagccaaattaatttcgattggcttttgcg |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47057651 |
gacctcgctcgaagctcaagggcttgatcagagcatggagatatagccaaagcctcatcaagaagactcaaagccaaattaatttcgattggcttttgcg |
47057552 |
T |
|
| Q |
208 |
tagcaataagggttcgtgcatctttgatatttctcttaacaatctacataacgaaaacaaaagcagacatataacatgtgtgatttctattactatcttg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47057551 |
tagcaataagggttcgtgcatctttgatatttctcttaacaatctacataacgaaaacaaaagcagacatataacatgtgtgatttctattactatcttg |
47057452 |
T |
|
| Q |
308 |
ggaataatgagcacattcaagagcaaaataattgtttaagttttacctgactgtttgtatgccacaaccagtgtttgatttttgtggcattggaatgggg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47057451 |
ggaataatgagcacattcaagagcaaaataattgtttaagttttacctgactgtctgtatgccacaaccagtgtttgatttttgtggcattggaatgggg |
47057352 |
T |
|
| Q |
408 |
agtagacgcagtgatagccatttttgttatatgagagaaagatttcaacctcaaaacaccgtttgtgtttgtttgattcttttcggaaacccaaatggct |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
47057351 |
agtagacgcagtgatagccatttttgttatatgagagaaagatttcaatctcaaaacactgtttgtgtttgtttgattcttttcggaaacctaaatggct |
47057252 |
T |
|
| Q |
508 |
atttaacattgagatcaagaaatataaaaggaaggaaaataaatggggacgcggcaatgagaacgagaacaggaaagaaacctttgctattgcctctaaa |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
47057251 |
atttaacattgagatcaagaaatataaaaggaaggaaaataaatggggacgcggcaatgagaacgagaacaggaaagaaacctttgttattgcctctaaa |
47057152 |
T |
|
| Q |
608 |
agaggagaaatgaatcagcttatacgtgccaaattaaaatcaagaaagattacttataatggaaaacttacctatttgagataggtgtaaaacttcaaat |
707 |
Q |
| |
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|
| T |
47057151 |
agaggagaaatgaatcagcttatacgtgccaaattaaaatcaagaaagattacttataatggaaaacttacctatttgagataggtgtaaaacttcaaat |
47057052 |
T |
|
| Q |
708 |
taaggcagaagagattattgaggaggttgcctaagaggaaggtgtactnnnnnnnnnnnnnnnnnnnggttttaaataagagtttatattaccacacgaa |
807 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
47057051 |
taaggcagaagagattattgaggaggttgcctaagaggaaggtgtact-aaaaaaaataaaaaataaggttttaaataagagtttatattaccacacgaa |
47056953 |
T |
|
| Q |
808 |
aacggtcgtga-caaaaggtaggttatcgtttttctccgttttaatagagtgaacaaaaataacaaaaacaatagcgac-aaatgcacgtacgccatgat |
905 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| |
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| T |
47056952 |
aacggtcgtgataaaaaggtaggttatcgtttttctccgttttaatagagtgaacaaaaataacaaaaacaatggcgacaaaatacacgtacgccatgat |
47056853 |
T |
|
| Q |
906 |
gaaactccgcacggccatgg-aaattgagggaac-ataaatgagat |
949 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||| ||||||||||| |
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|
| T |
47056852 |
gaaactccgtaaggccatggaaaattgagggaacaataaatgagat |
47056807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 2e-58; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 26977027 - 26977290
Alignment:
| Q |
11 |
acaagaatccgatcctgaatcatttgccattttcaaattaggaatatagtcttgaagcatatctgcaacatccttgaaccttctcagacatagtagagac |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||| ||| | ||||||||||||||||||||||| || |||||| || |||||| | |||| |
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| T |
26977027 |
acaagaatccgatcttgaatcatttgccatttttaaattaggcgtatggacttgaagcatatctgcaacatccgtgtaccttc-caaacatagcaaagac |
26977125 |
T |
|
| Q |
111 |
ctcgctcgaagctcaagggcttgatcagagcatggagatatagccaaagcctcatcaagaagactcaaagccaaattaatttcgattggcttttgcgtag |
210 |
Q |
| |
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| |||| |||| ||||| ||||||| ||||||| ||| ||||| | |||||| |||||||||||| |||||||| ||||||| ||||||||||||||| |
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|
| T |
26977126 |
cccgcttgaagttcaagtccttgatctgagcatgaagagatagcaagagcctcgtcaagaagactccaagccaaaacaatttcgcttggcttttgcgtag |
26977225 |
T |
|
| Q |
211 |
caataagggttcgtgcatctttgatatttctcttaacaatctacataacgaaaacaaaagcagacatataa |
281 |
Q |
| |
|
||||||||||| ||||||||| | |||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
26977226 |
gaataagggttcttgcatctttaacatttctctcaacaatctac------aaaacaaaagcagacatataa |
26977290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 507 - 674
Target Start/End: Complemental strand, 26970383 - 26970217
Alignment:
| Q |
507 |
tatttaacattgagatcaagaaatataaaaggaaggaaaataaatggggacgcggcaatgagaacgagaacaggaaagaaacctttgctattgcctctaa |
606 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| | |||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
26970383 |
tatttaacgttgagctcaagaaatatataaggtaagaaaataaatggggacgcatcaatgagaacgagaac-ggaaagaaacctttgttattgcctctaa |
26970285 |
T |
|
| Q |
607 |
aagaggagaaatgaatcagcttatacgtgccaaattaaaatcaagaaagattacttataatggaaaac |
674 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||| ||| ||||||| |
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|
| T |
26970284 |
aagaggagaagtgaatcagcttctacgtgccaaattaaaatcatgaaagatcactagtaacggaaaac |
26970217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 39 - 255
Target Start/End: Complemental strand, 26921173 - 26920957
Alignment:
| Q |
39 |
attttcaaattaggaatatagtcttgaagcatatctgcaacatccttgaaccttctcagacatagtagagacctcgctcgaagctcaagggcttgatcag |
138 |
Q |
| |
|
|||| |||| || ||||||| ||| ||| |||| || |||| ||||| |||||| ||| | |||| | ||| ||| |||||| | |||||||||||| | |
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|
| T |
26921173 |
atttccaaactaagaatatattctcgaaacataccttcaacgtccttaaaccttatcaaaaatagcaaagatctcattcgaagtttaagggcttgatctg |
26921074 |
T |
|
| Q |
139 |
agcatggagatatagccaaagcctcatcaagaagactcaaagccaaattaatttcgattggcttttgcgtagcaataagggttcgtgcatctttgatatt |
238 |
Q |
| |
|
||||||||| ||||| | |||||||||||||||||||| | ||||| |||||| |||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
26921073 |
agcatggagtgatagcaagagcctcatcaagaagactcacaaccaaaactatttcgcgtggcttttgcatagcaataagggttcgtgcatctttaatatt |
26920974 |
T |
|
| Q |
239 |
tctcttaacaatctaca |
255 |
Q |
| |
|
|| || ||||||||||| |
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|
| T |
26920973 |
tccctcaacaatctaca |
26920957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 26923272 - 26923418
Alignment:
| Q |
27 |
gaatcatttgccattttcaaattaggaatatagtcttgaagcatatctgcaacatccttgaaccttctcagacatagtagagacctcgctcgaagctcaa |
126 |
Q |
| |
|
||||||| || ||||||||| |||||| |||| ||||||||||||| | ||| |||||||||||||| |||||||| | |||| |||||||||| | || |
|
|
| T |
26923272 |
gaatcatatgtcattttcaacttaggagtatattcttgaagcatattttcaaggtccttgaaccttctaagacatagcatagacatcgctcgaagttgaa |
26923371 |
T |
|
| Q |
127 |
gggcttgatcagagcatggagatatagccaaagcctcatcaagaaga |
173 |
Q |
| |
|
|||||||||| ||| ||||||| ||||| | |||||||||||||||| |
|
|
| T |
26923372 |
gggcttgatctgagaatggagagatagcgagagcctcatcaagaaga |
26923418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 495 - 579
Target Start/End: Complemental strand, 26920796 - 26920711
Alignment:
| Q |
495 |
aacccaaa-tggctatttaacattgagatcaagaaatataaaaggaaggaaaataaatggggacgcggcaatgagaacgagaacag |
579 |
Q |
| |
|
|||||||| ||| |||||||| ||||| |||||||||||| |||| | | ||||||||||||||||| |||||||||||||||||| |
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|
| T |
26920796 |
aacccaaagtgggtatttaacgttgagctcaagaaatatataaggtaagcaaataaatggggacgcgtcaatgagaacgagaacag |
26920711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 26970695 - 26970629
Alignment:
| Q |
171 |
agactcaaagccaaattaatttcgattggcttttgcgtagcaataagggttcgtgcatctttgatatt |
238 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
26970695 |
agactcaaa-ccaaaacaatttcgattggcttttgcgtaacaataagggtttgtgcatctttgatatt |
26970629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 26970580 - 26970501
Alignment:
| Q |
286 |
tgtgatttctattactatcttgggaataatgagcacattcaagagcaaaataattgtttaagttttacctgactgtttgt |
365 |
Q |
| |
|
|||||||||||| |||| ||| | ||| ||||||||||||||| |||| | ||||||||| ||||||||||||||||| |
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|
| T |
26970580 |
tgtgatttctatgactacctttgtcatagtgagcacattcaagaataaaacagttgtttaaggtttacctgactgtttgt |
26970501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 674
Target Start/End: Complemental strand, 26920708 - 26920647
Alignment:
| Q |
613 |
agaaatgaatcagcttatacgtgccaaattaaaatcaagaaagattacttataatggaaaac |
674 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| ||||||| ||| ||| ||||||| |
|
|
| T |
26920708 |
agaagtgaatcagcttctacgtgccaaattaaaatcatgaaagatcactagtaacggaaaac |
26920647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 26920920 - 26920877
Alignment:
| Q |
315 |
tgagcacattcaagagcaaaataattgtttaagttttacctgac |
358 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
26920920 |
tgagcacattcaagaataaaataattgtttaaggtttacctgac |
26920877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 39108928 - 39108861
Alignment:
| Q |
29 |
atcatttgccattttcaaattaggaatatagtcttgaagcatatctgcaacatccttgaaccttctca |
96 |
Q |
| |
|
|||||| |||||||||||| | |||||||| ||||||||||||| ||| || || ||||| ||||||| |
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|
| T |
39108928 |
atcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctca |
39108861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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