View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2780-Insertion-3 (Length: 1035)

Name: NF2780-Insertion-3
Description: NF2780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2780-Insertion-3
NF2780-Insertion-3
[»] scaffold0129 (6 HSPs)
scaffold0129 (12-530)||(9347-9864)
scaffold0129 (871-1035)||(8911-9077)
scaffold0129 (639-772)||(9124-9259)
scaffold0129 (774-874)||(10007-10107)
scaffold0129 (51-339)||(17830-18121)
scaffold0129 (51-339)||(34226-34517)
[»] chr4 (6 HSPs)
chr4 (180-340)||(48742793-48742953)
chr4 (51-103)||(48742652-48742704)
chr4 (257-312)||(9603479-9603534)
chr4 (64-106)||(20425934-20425976)
chr4 (199-244)||(4876025-4876070)
chr4 (217-298)||(9573469-9573550)
[»] chr8 (7 HSPs)
chr8 (199-335)||(3368673-3368809)
chr8 (199-323)||(18140256-18140380)
chr8 (199-323)||(12721462-12721586)
chr8 (207-319)||(27183069-27183181)
chr8 (217-274)||(4027058-4027115)
chr8 (199-295)||(12723987-12724083)
chr8 (270-323)||(37829919-37829972)
[»] chr6 (8 HSPs)
chr6 (200-280)||(21379306-21379386)
chr6 (199-312)||(29144370-29144483)
chr6 (195-286)||(287456-287547)
chr6 (200-279)||(21375214-21375293)
chr6 (825-875)||(29012456-29012506)
chr6 (219-301)||(29299164-29299246)
chr6 (818-875)||(29149184-29149241)
chr6 (267-312)||(29153010-29153055)
[»] chr3 (2 HSPs)
chr3 (217-306)||(9704345-9704434)
chr3 (53-106)||(2703098-2703151)
[»] chr1 (7 HSPs)
chr1 (196-299)||(367930-368033)
chr1 (178-254)||(40399702-40399778)
chr1 (202-274)||(51869152-51869224)
chr1 (183-229)||(344312-344358)
chr1 (197-283)||(361028-361114)
chr1 (215-295)||(22536086-22536166)
chr1 (72-110)||(19220884-19220922)
[»] scaffold0054 (2 HSPs)
scaffold0054 (200-295)||(34326-34421)
scaffold0054 (200-295)||(40683-40778)
[»] chr2 (6 HSPs)
chr2 (207-274)||(29353303-29353370)
chr2 (257-335)||(7525003-7525081)
chr2 (199-244)||(13280334-13280379)
chr2 (72-106)||(27717666-27717700)
chr2 (257-334)||(7436177-7436254)
chr2 (218-335)||(44919370-44919487)
[»] chr5 (7 HSPs)
chr5 (198-295)||(29417661-29417758)
chr5 (257-338)||(37511978-37512059)
chr5 (199-274)||(9576302-9576377)
chr5 (178-280)||(42630456-42630558)
chr5 (198-295)||(24654599-24654696)
chr5 (207-244)||(42777165-42777202)
chr5 (234-295)||(42835422-42835483)
[»] scaffold0134 (1 HSPs)
scaffold0134 (64-100)||(16975-17011)
[»] chr7 (4 HSPs)
chr7 (199-303)||(42445419-42445523)
chr7 (199-295)||(45865969-45866065)
chr7 (825-875)||(42445887-42445937)
chr7 (199-244)||(25627371-25627416)
[»] scaffold0831 (1 HSPs)
scaffold0831 (181-291)||(2103-2213)


Alignment Details
Target: scaffold0129 (Bit Score: 487; Significance: 0; HSPs: 6)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 12 - 530
Target Start/End: Complemental strand, 9864 - 9347
Alignment:
Q  12 ggacccaatatgaaaccagggttgtcagactttctaaacggaggtggcgaacctaatttgactttattctcaaacctctcaccagaaagcaaatacaaca 111  Q
    ||||||||||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9864 ggacccaatataaatccagggttgtcagactttctgaacggagttggcgaacctaatttgactttattctcaaacctctcaccagaaagcaaatacaaca 9765  T
Q  112 cgtgactatgatagtgtggatatggcagagtctgttgtaaaaggagacatgatccatcgtcctcgctggatatgacattgttacgatacatgttcatgaa 211  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9764 tgtgactatgatagtgtggatatggcagagtctgttgtaaaaggagacatgatccatcgtcctcgctggatatgacattgttacgatacatgttcatgaa 9665  T
Q  212 attagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaatgtca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9664 attagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaatgtca 9565  T
Q  312 ttgtggatgtgattgctaaccttttcagttgaaattgatttctccatcttctcaggttcaaagcgccgaagttgaagtagcaatcgaaagtagaacttcg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9564 ttgtggatgtgattgctaaccttttcagttgaaattgatttctccatcttctcaggttcaaagcgccgaagttgaagtagcaatcgaaagtagaacttcg 9465  T
Q  412 cgaacctctgtaacccaaccccccactcacagacagtagcgatcgagagtgaagatgaaatgaattagggtttttaaacgatttatcatttccttttaca 511  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9464 cgaacctctgtaacccaa-cccacactcacagacagtagcgatcgagagtgaagatgaaatgaattagggtttttaaacgatttatcatttccttttaca 9366  T
Q  512 ctgctgctataatatagag 530  Q
    |||||||||||||||||||    
T  9365 ctgctgctataatatagag 9347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 871 - 1035
Target Start/End: Complemental strand, 9077 - 8911
Alignment:
Q  871 gaagaaccatattcaacacttaaatctaagtcaaactcccatccttccctgcgagtgacaaacgaaagaaaattcaattacctatcgaccgttgctctcc 970  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||| ||    
T  9077 gaagaaccatattcaacacttaaatctaagtcaaactcccatccttccttgcgagtgacgaacgaaataaaattcaattacctatcgaccgttgctcccc 8978  T
Q  971 ataatccctccaaaacaaatcatccaactgatcaaagcacct-aaagct-aacctcaactcatcatc 1035  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||    
T  8977 ataacccctccaaaacaaatcatccaactgatcaaagcacctaaaagctaaacctcaactcctcatc 8911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #3
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 639 - 772
Target Start/End: Complemental strand, 9259 - 9124
Alignment:
Q  639 ttgtaataatttataacttaattaaagatttcaaatcctatatcatttggatcaannnnnnnnn--acaattggaccaattcatagttggtcgtgccatt 736  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||    
T  9259 ttgtaataatttataacttaattaaagatttcaaatcctatatcatttggatcaatttttttttttacaattggaccaattcatagttggtcgtgccatt 9160  T
Q  737 ttcttatgttattttctaaaatatcacatgatgtaa 772  Q
    ||||||||||||||||||||||||||||||||||||    
T  9159 ttcttatgttattttctaaaatatcacatgatgtaa 9124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #4
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 774 - 874
Target Start/End: Complemental strand, 10107 - 10007
Alignment:
Q  774 tcgctatcatcattttcatagtcggataaattcagttcatactgtacatggcgaatcaccttatagtcgttgctaacactgtcataaccaaatccatgaa 873  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10107 tcgctatcatcattttcatagtcggataaattcagttcatactgtacatggcgaatcaccttatagtcgtcgctaacactgtcataaccaaatccatgaa 10008  T
Q  874 g 874  Q
    |    
T  10007 g 10007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 51 - 339
Target Start/End: Original strand, 17830 - 18121
Alignment:
Q  51 ggaggtggcgaacctaatttgactttattctcaaacctctcaccagaaagcaaatacaacacgtgactatgatagtgtggatatggcagagtctgttgta 150  Q
    ||||||||| ||  ||||||||| ||||||||||||||||||||| |||||||||| ||||| |||    |||   ||  ||||||||||||||||||||    
T  17830 ggaggtggccaatttaatttgaccttattctcaaacctctcaccaaaaagcaaatataacacatgaa---gatttggtaaatatggcagagtctgttgta 17926  T
Q  151 aaaggagacatgatccatcgtcctcg------ctggatatgacattgttacgatacatgttcatgaaattagggttttcaaataagcgagaccatgattt 244  Q
      ||||||||||  ||||| |||||       || ||||||| ||  || || |||||||||| ||||||||  || |||||||||| ||||||||||||    
T  17927 ggaggagacatggaccatcttcctcataagtactagatatgaaataattgcggtacatgttcaagaaattagaattctcaaataagcaagaccatgattt 18026  T
Q  245 atgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaatgtcattgtggatgtgattgctaaccttttcag 339  Q
    | |||| |||||||| |||||||||||||||||||||| |||||| ||||||||||||||||  ||||  || || |||||||||||||||||||    
T  18027 acgtacgcaactaaaccgtttcaaagatttaagaggcagtttggacagaatggaaaatgcaagatcatcatgaatatgattgctaaccttttcag 18121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #6
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 51 - 339
Target Start/End: Original strand, 34226 - 34517
Alignment:
Q  51 ggaggtggcgaacctaatttgactttattctcaaacctctcaccagaaagcaaatacaacacgtgactatgatagtgtggatatggcagagtctgttgta 150  Q
    ||||||||| || | |||||||| ||||||||||||||||||||| |||||||||| ||||| |||    |||   ||  ||||||||||||||||||||    
T  34226 ggaggtggccaatcaaatttgaccttattctcaaacctctcaccaaaaagcaaatataacacatgaa---gatttggtaaatatggcagagtctgttgta 34322  T
Q  151 aaaggagacatgatccatcgtcctcg------ctggatatgacattgttacgatacatgttcatgaaattagggttttcaaataagcgagaccatgattt 244  Q
      |||||| |||| ||||| |||||       |||||||||| ||  || || |||||||| ||||||||||| || ||||||||| |||||||||||||    
T  34323 ggaggagagatgaaccatcctcctcataagtactggatatgaaatatttgcggtacatgtttatgaaattaggattctcaaataagtgagaccatgattt 34422  T
Q  245 atgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaatgtcattgtggatgtgattgctaaccttttcag 339  Q
    | |||| |||||||| |||||  ||||||||||||||||||| || |||||| |||||||||  ||||  || || |||||||||||||||||||    
T  34423 acgtacgcaactaaaacgttttgaagatttaagaggcaattttgatagaatgaaaaatgcaagatcatcatgaatatgattgctaaccttttcag 34517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 8e-33; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 180 - 340
Target Start/End: Original strand, 48742793 - 48742953
Alignment:
Q  180 gatatgacattgttacgatacatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagag 279  Q
    ||||||| || ||| || ||||||||||||||||||| ||||| ||||||| | |||||||||||  ||||||||||||| |||||||||||||||||||    
T  48742793 gatatgaaatagttgcggtacatgttcatgaaattagagttttgaaataagtgtgaccatgatttccgtacacaactaaaccgtttcaaagatttaagag 48742892  T
Q  280 gcaatttggagagaatggaaaatgcaatgtcattgtggatgtgattgctaaccttttcagt 340  Q
    |||||||||||| |||  ||||| |||  ||||   | || ||||||||||||||||||||    
T  48742893 gcaatttggagacaataaaaaattcaagatcatcaggaatatgattgctaaccttttcagt 48742953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 48742652 - 48742704
Alignment:
Q  51 ggaggtggcgaacctaatttgactttattctcaaacctctcaccagaaagcaa 103  Q
    ||||||||| || |||||||||| |||||||||||| ||||||||||||||||    
T  48742652 ggaggtggccaatctaatttgaccttattctcaaacgtctcaccagaaagcaa 48742704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 9603479 - 9603534
Alignment:
Q  257 aaatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaatgtcat 312  Q
    |||||| || ||||||||||||||||||||||| |||||||| || ||||| ||||    
T  9603479 aaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcat 9603534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 20425976 - 20425934
Alignment:
Q  64 ctaatttgactttattctcaaacctctcaccagaaagcaaata 106  Q
    |||||||||||  |||||||||||||||||||||||| |||||    
T  20425976 ctaatttgactcgattctcaaacctctcaccagaaagtaaata 20425934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 4876070 - 4876025
Alignment:
Q  199 acatgttcatgaaattagggttttcaaataagcgagaccatgattt 244  Q
    |||||||||||||||||||||||| ||||||  ||||| |||||||    
T  4876070 acatgttcatgaaattagggttttgaaataaaagagacgatgattt 4876025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 9573550 - 9573469
Alignment:
Q  217 ggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatgga 298  Q
    ||||||||| |||  |||||||||||||  | |||||   |||||| || |||||||||| |||||||||||| ||||||||    
T  9573550 ggttttcaattaacagagaccatgatttgcgaacacattcaaatcgcttaaaagatttaataggcaatttggatagaatgga 9573469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 199 - 335
Target Start/End: Original strand, 3368673 - 3368809
Alignment:
Q  199 acatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatgga 298  Q
    |||||| |||||||| |||||||||||||||| |||||||||||||| | ||||||| ||||||   ||||||||| ||||| ||||| || ||||||      
T  3368673 acatgtccatgaaataagggttttcaaataagagagaccatgatttacgcacacaacgaaatcgaaacaaagatttgagaggtaatttagacagaatgac 3368772  T
Q  299 aaatgcaatgtcattgtggatgtgattgctaaccttt 335  Q
     || |||| |||||  |  ||||||||||||||||||    
T  3368773 gaaggcaacgtcatcatatatgtgattgctaaccttt 3368809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 199 - 323
Target Start/End: Original strand, 18140256 - 18140380
Alignment:
Q  199 acatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatgga 298  Q
    ||||||||||||||||||||||||  |||||  | ||||||||||| |   ||||  |||| ||||| | |||||||| ||||||||| |||||||||||    
T  18140256 acatgttcatgaaattagggttttggaataaaagtgaccatgattttttagcacaggtaaaacgtttgagagatttaataggcaatttagagagaatgga 18140355  T
Q  299 aaatgcaatgtcattgtggatgtga 323  Q
     || |||||||||| ||| ||||||    
T  18140356 gaaagcaatgtcatcgtgaatgtga 18140380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 323
Target Start/End: Complemental strand, 12721586 - 12721462
Alignment:
Q  199 acatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatgga 298  Q
    |||| ||||||||  |||||||||  |||||  || |||||||||| |  |||||| | |||||||| | ||||||||| ||||||||||||||||| ||    
T  12721586 acatattcatgaatatagggttttggaataaaagaaaccatgattttttaacacaagtgaatcgtttgagagatttaagcggcaatttggagagaataga 12721487  T
Q  299 aaatgcaatgtcattgtggatgtga 323  Q
     || |||||||| | ||| ||||||    
T  12721486 gaaagcaatgtcgtcgtgtatgtga 12721462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 319
Target Start/End: Complemental strand, 27183181 - 27183069
Alignment:
Q  207 atgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaa 306  Q
    |||||||||||||||| ||||||  |||||||||||||    |||||| ||||||| || | |||||||| ||| | ||| |||||||| || || ||||    
T  27183181 atgaaattagggttttgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagatttaatagggagtttagagagaatagataaagcaa 27183082  T
Q  307 tgtcattgtggat 319  Q
    |||||| ||||||    
T  27183081 tgtcatcgtggat 27183069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 4027115 - 4027058
Alignment:
Q  217 ggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagattt 274  Q
    |||||||||||||| ||||||||| ||| |||||||| | ||| ||||||||||||||    
T  4027115 ggttttcaaataagagagaccatggtttgtgtacacatccaaaacgtttcaaagattt 4027058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 12724083 - 12723987
Alignment:
Q  199 acatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaat 295  Q
    |||||||||||||| ||| |||||  || ||  ||||||||||||| ||  ||||| | || ||| | | |||||||||||||||||||||||||||    
T  12724083 acatgttcatgaaaatagagttttggaacaaaagagaccatgatttttgagcacaagtgaaacgtgtgagagatttaagaggcaatttggagagaat 12723987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 37829972 - 37829919
Alignment:
Q  270 gatttaagaggcaatttggagagaatggaaaatgcaatgtcattgtggatgtga 323  Q
    ||||||||||||||||||||||||||  | | ||||||||||| ||| ||||||    
T  37829972 gatttaagaggcaatttggagagaataaagattgcaatgtcatcgtgtatgtga 37829919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 21379306 - 21379386
Alignment:
Q  200 catgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagagg 280  Q
    |||||||||||||| || ||||||||||||| |||||||||||||| | || || | |||||| |||||||||||||||||    
T  21379306 catgttcatgaaataagtgttttcaaataagagagaccatgatttacggacgcatccaaatcgcttcaaagatttaagagg 21379386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 312
Target Start/End: Complemental strand, 29144483 - 29144370
Alignment:
Q  199 acatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatgga 298  Q
    ||||||||||||||| ||  | |||||||||| || |||| |||||| | || || | |||||| ||||||||||||||||||||||| || ||||||||    
T  29144483 acatgttcatgaaatgagtatcttcaaataagagataccaagatttacgaacgcatccaaatcgcttcaaagatttaagaggcaatttcgatagaatgga 29144384  T
Q  299 aaatgcaatgtcat 312  Q
     || ||||| ||||    
T  29144383 taaggcaatatcat 29144370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 286
Target Start/End: Original strand, 287456 - 287547
Alignment:
Q  195 cgatacatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaattt 286  Q
    ||||||||| ||||||| | | | |||||||| ||| ||| ||||||||||  |||||| | ||||||||| |||||||| |||||||||||    
T  287456 cgatacatggtcatgaagtgaagattttcaaacaagagagtccatgatttacatacacatccaaatcgttttaaagattttagaggcaattt 287547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 21375214 - 21375293
Alignment:
Q  200 catgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagag 279  Q
    |||||||||||||| |  ||||||||||||| | |||||||||||||  || || | |||||  ||||||||||||||||    
T  21375214 catgttcatgaaataaatgttttcaaataagagggaccatgatttatagacgcatccaaatcacttcaaagatttaagag 21375293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 825 - 875
Target Start/End: Complemental strand, 29012506 - 29012456
Alignment:
Q  825 cgaatcaccttatagtcgttgctaacactgtcataaccaaatccatgaaga 875  Q
    ||||| ||||||||||| ||  |||||| ||||||||||||||||||||||    
T  29012506 cgaatgaccttatagtcttttgtaacacggtcataaccaaatccatgaaga 29012456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 301
Target Start/End: Complemental strand, 29299246 - 29299164
Alignment:
Q  219 ttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatggaaaa 301  Q
    |||||||| ||| |||||||||||||  | |||||   ||| || || ||||||||||||||||| || ||||||||||||||    
T  29299246 ttttcaaacaagagagaccatgatttgcgaacacattcaaaacgcttaaaagatttaagaggcaactttgagagaatggaaaa 29299164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 818 - 875
Target Start/End: Original strand, 29149184 - 29149241
Alignment:
Q  818 tacatggcgaatcaccttatagtcgttgctaacactgtcataaccaaatccatgaaga 875  Q
    |||||| ||||| || |||||||||||  |||||  ||||||||||||||||||||||    
T  29149184 tacatgccgaatgacattatagtcgtttataacatggtcataaccaaatccatgaaga 29149241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 29153010 - 29153055
Alignment:
Q  267 aaagatttaagaggcaatttggagagaatggaaaatgcaatgtcat 312  Q
    |||||||||||||||||||| ||||||||||| || ||||| ||||    
T  29153010 aaagatttaagaggcaattttgagagaatggagaaggcaatatcat 29153055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 306
Target Start/End: Complemental strand, 9704434 - 9704345
Alignment:
Q  217 ggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaa 306  Q
    |||||||||||||  | | |||||||||| | ||||| ||||||||||| |||||||| ||||| ||||| || ||||||||||||||||    
T  9704434 ggttttcaaataaaagtgtccatgatttacgaacacatctaaatcgttttaaagatttcagaggtaattttgatagaatggaaaatgcaa 9704345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 2703151 - 2703098
Alignment:
Q  53 aggtggcgaacctaatttgactttattctcaaacctctcaccagaaagcaaata 106  Q
    ||||||| || | ||||| |||||||||||||| || |||||||||||||||||    
T  2703151 aggtggcaaatccaatttcactttattctcaaatctatcaccagaaagcaaata 2703098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 299
Target Start/End: Complemental strand, 368033 - 367930
Alignment:
Q  196 gatacatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaat 295  Q
    ||||||||||||||||||||||||| ||||||||| |   |||||||||  |||||||  |||||||  |||||||||| ||||||| ||| || | |||    
T  368033 gatacatgttcatgaaattagggttatcaaataagagtacccatgatttgcgtacacatttaaatcgagtcaaagattttagaggcagttttgacataat 367934  T
Q  296 ggaa 299  Q
    ||||    
T  367933 ggaa 367930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 40399702 - 40399778
Alignment:
Q  178 tggatatgacattgttacgatacatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaa 254  Q
    |||| |||| |||||| || |||||||||||||||||||||||||| |||||  ||| ||||||||| || ||||||    
T  40399702 tggaaatgatattgttgcggtacatgttcatgaaattagggttttcgaataaaagagtccatgatttgtgaacacaa 40399778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 51869224 - 51869152
Alignment:
Q  202 tgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagattt 274  Q
    |||||||||||| ||||| |||||||||| ||||||||| ||| | | |||| | ||||||||||||||||||    
T  51869224 tgttcatgaaatgagggtcttcaaataagagagaccatggtttgtatgcacatccaaatcgtttcaaagattt 51869152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 344358 - 344312
Alignment:
Q  183 atgacattgttacgatacatgttcatgaaattagggttttcaaataa 229  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||||    
T  344358 atgaaattgttacaatacatgttcataaaattagggttttcaaataa 344312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 283
Target Start/End: Complemental strand, 361114 - 361028
Alignment:
Q  197 atacatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaa 283  Q
    ||||||||||||||||| |||||||||||||||   |  ||||||||| ||||||||  | ||||| | ||||||||| ||||||||    
T  361114 atacatgttcatgaaataagggttttcaaataacataacccatgatttgtgtacacatttgaatcgatgcaaagattttagaggcaa 361028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 22536086 - 22536166
Alignment:
Q  215 agggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaat 295  Q
    ||||||||| |||||  ||||||||||||| || || ||| ||||||||   |  ||||||||||||||||||||||||||    
T  22536086 agggttttcgaataaaagagaccatgatttttgaacgcaagtaaatcgtgcgagggatttaagaggcaatttggagagaat 22536166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 19220922 - 19220884
Alignment:
Q  72 actttattctcaaacctctcaccagaaagcaaatacaac 110  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  19220922 actttattctcaaatctctcaccagaaagtaaatacaac 19220884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 34326 - 34421
Alignment:
Q  200 catgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaat 295  Q
    ||||||||||| ||   |||||||||||||| | |||||||||||| | || || | |||||| ||||||||||||||||| | |||||| |||||    
T  34326 catgttcatgagatgttggttttcaaataagagtgaccatgatttacgaacgcatcgaaatcggttcaaagatttaagagggagtttggatagaat 34421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 40683 - 40778
Alignment:
Q  200 catgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaat 295  Q
    ||||||||||| ||   |||||||||||||| | |||||||||||| | || || | |||||| |||||||||| |||||| | |||||| |||||    
T  40683 catgttcatgagatgttggttttcaaataagagtgaccatgatttacgaacgcatcgaaatcggttcaaagattgaagagggagtttggatagaat 40778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 29353303 - 29353370
Alignment:
Q  207 atgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagattt 274  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||| || | ||| || |||||||||||    
T  29353303 atgaaattagggttttcaaataagagagaccatgttttatttacgcatccaaaacgcttcaaagattt 29353370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 335
Target Start/End: Original strand, 7525003 - 7525081
Alignment:
Q  257 aaatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaatgtcattgtggatgtgattgctaaccttt 335  Q
    |||||| | ||||||||||||||||||||| || ||||||||||||||||  || |   | ||||||||||||||||||    
T  7525003 aaatcgctgcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtatgtgattgctaaccttt 7525081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 13280379 - 13280334
Alignment:
Q  199 acatgttcatgaaattagggttttcaaataagcgagaccatgattt 244  Q
    |||||||||||||| ||||||||||||||||  |||||||||||||    
T  13280379 acatgttcatgaaaatagggttttcaaataaatgagaccatgattt 13280334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 27717666 - 27717700
Alignment:
Q  72 actttattctcaaacctctcaccagaaagcaaata 106  Q
    |||||||||||||| ||||||||||||||||||||    
T  27717666 actttattctcaaatctctcaccagaaagcaaata 27717700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 7436177 - 7436254
Alignment:
Q  257 aaatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaatgtcattgtggatgtgattgctaacctt 334  Q
    |||||| |||||||||||||||||||| || || |||||||| | |||||  ||||   | |||||||||||||||||    
T  7436177 aaatcgcttcaaagatttaagaggcaaatttgatagaatggagattgcaacatcatcaggtatgtgattgctaacctt 7436254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 335
Target Start/End: Original strand, 44919370 - 44919487
Alignment:
Q  218 gttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaatgtcattgtgg 317  Q
    ||||||||||||| ||| |||||||||| |||||||   |||| | || |||||||| | ||| | ||| || ||||| || |||||||  |||||| |     
T  44919370 gttttcaaataagagagcccatgatttacgtacacattcaaatggcttaaaagattttaaaggaagttttgacagaatagagaatgcaagatcattgggt 44919469  T
Q  318 atgtgattgctaaccttt 335  Q
    |||||||| |||||||||    
T  44919470 atgtgattcctaaccttt 44919487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 29417661 - 29417758
Alignment:
Q  198 tacatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaat 295  Q
    |||||| ||||||||| |||||| || |||||  | |||||||||||||||||||||| ||| || ||||| | ||| | ||| |||||||| |||||    
T  29417661 tacatggtcatgaaataagggttatctaataaaagggaccatgatttatgtacacaaccaaaacgcttcaatggttttataggtaatttggaaagaat 29417758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 338
Target Start/End: Complemental strand, 37512059 - 37511978
Alignment:
Q  257 aaatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaatgtcattgtggatgtgattgctaaccttttca 338  Q
    |||||||||||||||||| ||||||| ||| || | |||||| || |||||||||| ||| || || || ||||||||||||    
T  37512059 aaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaatgtcatcgtgaatatggttcctaaccttttca 37511978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 274
Target Start/End: Original strand, 9576302 - 9576377
Alignment:
Q  199 acatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagattt 274  Q
    ||||| ||||||||| |||||||||||| ||| ||| |||| |||| |||||||| | ||||||  ||||||||||    
T  9576302 acatgctcatgaaataagggttttcaaacaagagagtccataatttttgtacacagcaaaatcgaatcaaagattt 9576377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 280
Target Start/End: Original strand, 42630456 - 42630558
Alignment:
Q  178 tggatatgacattgttacgatacatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaag 277  Q
    |||||| || ||| || ||| ||||||||||||||| ||  |||| ||| ||  |||||||||||||| | ||||||| ||||||   ||||||||||||    
T  42630456 tggataagaaattctttcgaaacatgttcatgaaataagaatttttaaacaaaagagaccatgatttacgcacacaaccaaatcgaaacaaagatttaag 42630555  T
Q  278 agg 280  Q
    |||    
T  42630556 agg 42630558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 24654696 - 24654599
Alignment:
Q  198 tacatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaat 295  Q
    |||||| ||||||||| |||||| || |||||  | |||||||||||| ||||||||| ||| || || || ||||| | ||| |||||||| |||||    
T  24654696 tacatggtcatgaaataagggttatctaataaaagggaccatgatttacgtacacaaccaaaacgcttgaatgattttataggtaatttggaaagaat 24654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 42777202 - 42777165
Alignment:
Q  207 atgaaattagggttttcaaataagcgagaccatgattt 244  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  42777202 atgaaattagggttatcaaataagagagaccatgattt 42777165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 42835422 - 42835483
Alignment:
Q  234 gaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaat 295  Q
    ||||||||||| ||||| || | |||||| ||||||||||||| || || ||||||||||||    
T  42835422 gaccatgatttgtgtacgcatccaaatcgcttcaaagatttaatagacattttggagagaat 42835483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 16975 - 17011
Alignment:
Q  64 ctaatttgactttattctcaaacctctcaccagaaag 100  Q
    |||||||||| ||||||||||||||||||||||||||    
T  16975 ctaatttgaccttattctcaaacctctcaccagaaag 17011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 42445523 - 42445419
Alignment:
Q  199 acatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaatgga 298  Q
    ||||||||||||||| | |||||||| ||||| |||||||  ||||| | |||||   |||||| || |||||||||||||| ||||| || | ||||||    
T  42445523 acatgttcatgaaatgatggttttcagataagagagaccacaatttacgaacacattcaaatcgcttaaaagatttaagaggtaattttgatataatgga 42445424  T
Q  299 aaatg 303  Q
     ||||    
T  42445423 gaatg 42445419  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 45866065 - 45865969
Alignment:
Q  199 acatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagaggcaatttggagagaat 295  Q
    |||||| |||||||| || |||||| |||||  |||||| ||||||| || ||||||  ||||   |||||||||| ||||||||||| ||||||||    
T  45866065 acatgtccatgaaataagagttttcgaataaaagagaccgtgatttacgtgcacaacggaatctaatcaaagatttgagaggcaattttgagagaat 45865969  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 825 - 875
Target Start/End: Complemental strand, 42445937 - 42445887
Alignment:
Q  825 cgaatcaccttatagtcgttgctaacactgtcataaccaaatccatgaaga 875  Q
    ||||| ||||||||||| |   |||||||||||||||||||||||||||||    
T  42445937 cgaatgaccttatagtcatctgtaacactgtcataaccaaatccatgaaga 42445887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 25627416 - 25627371
Alignment:
Q  199 acatgttcatgaaattagggttttcaaataagcgagaccatgattt 244  Q
    ||||| ||||||||  |||||||||||||||| |||||||||||||    
T  25627416 acatggtcatgaaagaagggttttcaaataagagagaccatgattt 25627371  T

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Target: scaffold0831 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 291
Target Start/End: Original strand, 2103 - 2213
Alignment:
Q  181 atatgacattgttacgatacatgttcatgaaattagggttttcaaataagcgagaccatgatttatgtacacaactaaatcgtttcaaagatttaagagg 280  Q
    |||||| |||||| ||| |||| |||||||||| ||| | |||||||||  |||||||||| ||   | ||||| ||||||| || | ||||||||||||    
T  2103 atatgaaattgttgcgaaacattttcatgaaatgaggatcttcaaataaaagagaccatgacttgcatgcacaagtaaatcgcttgagagatttaagagg 2202  T
Q  281 caatttggaga 291  Q
     | ||||||||    
T  2203 tagtttggaga 2213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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