View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2780-Insertion-4 (Length: 466)

Name: NF2780-Insertion-4
Description: NF2780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2780-Insertion-4
NF2780-Insertion-4
[»] chr5 (3 HSPs)
chr5 (8-466)||(7901729-7902187)
chr5 (12-130)||(7891747-7891865)
chr5 (245-375)||(7891414-7891544)
[»] chr8 (1 HSPs)
chr8 (9-464)||(31213708-31214165)


Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 466
Target Start/End: Complemental strand, 7902187 - 7901729
Alignment:
Q  8 ctcagaacaaggaaatagtggtcctggttttccattgatcgtatgtgcatctgacacatttggtggcaaccccaatttgtttccttgcttttcaatctct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  7902187 ctcagaacaaggaaatagtggtcctggttttccattgatcgtatgtgcatctgacatatttggtggcaaccccaatttgttcccttgcttttcaatctct 7902088  T
Q  108 tccacatcattgttccaccattcacctattggatgcagaaacaattagtacatcaactttcatacttcttatttcatccgatgaatctttataatacnnn 207  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       
T  7902087 tccacatcattgttccaccattcacctattgcatgcagaaacaattagtacatcaactttcatacttcttatttcatcccatgaatctttataatacttt 7901988  T
Q  208 nnnnnggaaaaatgaatctttataatacttacctaagacaatttcgaattctctagctggctgtgggaaaggaaacggtgttccaagtttaggcataatt 307  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7901987 tttttggaaaaatgaatctttataatacttacctaagacaatttcgaattctctagctggctgtgggaaaggaaatggtgttccaagtttaggcataatt 7901888  T
Q  308 actattgccccgtagacagtggccctaagccagaaaatgtgtgcatgccaccatagtgttcctctttgcccagtaacgttgaattcgtaagtatagctgt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7901887 actattgccccgtagacagtggccctaagccagaaaatgtgtgcatgccaccatagtgttcctctttgcccagtaacgttgaattcgtaagtatagctgt 7901788  T
Q  408 ttccggtctgtatcggacactgtgtgatgtaagccggtccatccgcccaaccattacga 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7901787 ttccggtctgtatcggacactgtgtgatgtaagccggtccatccgcccaaccattacga 7901729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 7891865 - 7891747
Alignment:
Q  12 gaacaaggaaatagtggtcctggttttccattgatcgtatgtgcatctgacacatttggtggcaaccccaatttgtttccttgcttttcaatctcttcca 111  Q
    ||||||||||| ||||||||||| || |||||||||||||||||||| |||| ||||||||||||||||| || ||| ||||| ||| | ||||||||||    
T  7891865 gaacaaggaaagagtggtcctggcttcccattgatcgtatgtgcatccgacatatttggtggcaaccccatttggttcccttggtttactatctcttcca 7891766  T
Q  112 catcattgttccaccattc 130  Q
    |||| |||| |||||||||    
T  7891765 catctttgtgccaccattc 7891747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 375
Target Start/End: Complemental strand, 7891544 - 7891414
Alignment:
Q  245 acaatttcgaattctctagctggctgtgggaaaggaaacggtgttccaagtttaggcataattactattgccccgtagacagtggccctaagccagaaaa 344  Q
    |||||||| |||||||||||||| ||||| |||||||| || |||||  |||||||||| || || ||||| || || ||||| ||||| | ||| | ||    
T  7891544 acaatttcaaattctctagctggttgtggaaaaggaaaaggggttcctggtttaggcatgataacaattgcaccataaacagtagcccttaaccaaagaa 7891445  T
Q  345 tgtgtgcatgccaccatagtgttcctctttg 375  Q
    | || ||||||||||| |  |||||||||||    
T  7891444 tatgagcatgccaccacaaagttcctctttg 7891414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 464
Target Start/End: Complemental strand, 31214165 - 31213708
Alignment:
Q  9 tcagaacaaggaaatagtggtcctggttttccattgatcgtatgtgcatctgacacatttggtggcaaccccaatttgtttccttgcttttcaatctctt 108  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||  ||||||||||| |||||||||||||    
T  31214165 tcagaacaaggaaatagcggtcctggttttccattgatcgtatgtgcatctgacatatttggtgacaaccccatattgtttccttgattttcaatctctt 31214066  T
Q  109 ccacatcattgttccaccattcacctattggatgcagaaacaattagtacatcaactttcatacttcttatttcatccgatgaatctttataatacnnnn 208  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    ||||||||||||||||||||        
T  31214065 ccacatcattgttccaccattcacctattgcatgcagaaacaattagtatatcaactttcatacttcttatt----ccgatgaatctttataatactttt 31213970  T
Q  209 nnnn----ggaaaaatgaatctttataatacttacctaagacaatttcgaattctctagctggctgtgggaaaggaaacggtgttccaagtttaggcata 304  Q
            ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||||||||||||     
T  31213969 ttttttttggaaaaatgaatctttataatacttacctaagacaattttgacttctctagctggctgtgggaaaggaaa-ggtattccaagtttaggcatg 31213871  T
Q  305 attactattgccccgtagacagtggccctaagccagaaaatgtgtgcatgccaccatagtgtt---cctctttgcccagtaacgttgaattcgtaagtat 401  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||| ||||||||    
T  31213870 attactattgccccatagacagtggccctcagccagaaaatgtgtgcatgccaccatagtgttgttcctcttttcccagtaacgttgaatttgtaagtat 31213771  T
Q  402 agctgtttccggtctgtatcggacactgtgtgatgtaagccggtccatccgcccaaccattac 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31213770 agctgtttccggtctgtatcggacactgtgtgatgtaagccggtccatccgccaaaccattac 31213708  T

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