View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2780R-Insertion-1 (Length: 950)

Name: NF2780R-Insertion-1
Description: NF2780R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2780R-Insertion-1
NF2780R-Insertion-1
[»] scaffold0129 (5 HSPs)
scaffold0129 (11-937)||(9866-10799)
scaffold0129 (475-757)||(33487-33772)
scaffold0129 (475-757)||(17091-17376)
scaffold0129 (327-379)||(17466-17518)
scaffold0129 (327-379)||(33862-33914)
[»] chr4 (7 HSPs)
chr4 (637-853)||(48741824-48742044)
chr4 (326-385)||(48742285-48742344)
chr4 (573-690)||(9581990-9582107)
chr4 (573-690)||(9587685-9587802)
chr4 (573-689)||(37897898-37898014)
chr4 (595-691)||(54295087-54295183)
chr4 (329-386)||(54295401-54295458)
[»] chr3 (2 HSPs)
chr3 (627-823)||(44550353-44550552)
chr3 (631-689)||(5162455-5162513)
[»] chr5 (13 HSPs)
chr5 (627-689)||(42637357-42637419)
chr5 (629-669)||(40545118-40545158)
chr5 (329-373)||(27173761-27173805)
chr5 (629-689)||(31789523-31789583)
chr5 (633-687)||(40549282-40549336)
chr5 (633-687)||(42413999-42414053)
chr5 (329-373)||(32642643-32642687)
chr5 (629-677)||(42629649-42629697)
chr5 (333-373)||(42782933-42782973)
chr5 (632-687)||(15807728-15807783)
chr5 (638-689)||(32032881-32032932)
chr5 (629-667)||(37512898-37512936)
chr5 (53-90)||(16228117-16228154)
[»] chr6 (7 HSPs)
chr6 (568-689)||(32744869-32744990)
chr6 (631-691)||(29012843-29012903)
chr6 (329-373)||(32745206-32745250)
chr6 (329-373)||(32961073-32961117)
chr6 (329-384)||(34258565-34258620)
chr6 (631-693)||(29145307-29145369)
chr6 (627-660)||(29131315-29131348)
[»] chr8 (6 HSPs)
chr8 (329-373)||(12646834-12646878)
chr8 (329-369)||(12651966-12652006)
chr8 (631-687)||(12652271-12652327)
chr8 (628-687)||(3367860-3367919)
chr8 (638-688)||(24466340-24466390)
chr8 (332-369)||(12516864-12516901)
[»] chr2 (7 HSPs)
chr2 (627-687)||(44937806-44937866)
chr2 (627-666)||(7488784-7488823)
chr2 (632-687)||(44912530-44912585)
chr2 (627-689)||(7498901-7498963)
chr2 (631-687)||(44918495-44918551)
chr2 (327-373)||(16920700-16920746)
chr2 (627-664)||(7530337-7530374)
[»] chr1 (3 HSPs)
chr1 (627-691)||(368802-368866)
chr1 (329-373)||(22535507-22535551)
chr1 (329-375)||(344828-344874)
[»] chr7 (3 HSPs)
chr7 (152-201)||(42445888-42445937)
chr7 (632-691)||(25628199-25628258)
chr7 (631-677)||(45866863-45866909)
[»] scaffold0054 (1 HSPs)
scaffold0054 (329-373)||(33789-33833)
[»] scaffold0134 (1 HSPs)
scaffold0134 (627-661)||(16262-16296)
[»] scaffold0613 (1 HSPs)
scaffold0613 (627-660)||(204-237)


Alignment Details
Target: scaffold0129 (Bit Score: 831; Significance: 0; HSPs: 5)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 831; E-Value: 0
Query Start/End: Original strand, 11 - 937
Target Start/End: Original strand, 9866 - 10799
Alignment:
Q  11 gttattaacggaattgtttgtctttaccatagtggtacaaatgttgtattatggaatccaactaacgatgaatttaaggtccttcctgaaagccctactg 110  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| |||||||    
T  9866 gttattaacggaattgtttgtctttaccaaagtggtacaaatgttgtattatggaatccaactaacggcgaatttaaggtgcttcctgaaagtcctactg 9965  T
Q  111 atttagagccctcagtacgttatgagattgaactggaacgacttcatggatttggttatgacagtgttagcgacgactataaggtgattcgccatgtaca 210  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9966 agttagagccctcagtacgttatgagattgaactggaacgacttcatggatttggttatgacagtgttagcgacgactataaggtgattcgccatgtaca 10065  T
Q  211 gtatgaactgaatttatccgactatgaaaatgaagatagcgactttgaaggtgatgcgttatctgactatgaaagtgatgcggtaagtctgccaactagc 310  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10066 gtatgaactgaatttatccgactatgaaaatgatgatagcgactttgaaggtgatgcgttatctgactatgaaagcgatgcggtaagtctgccaactagc 10165  T
Q  311 atgttacgtgatgatgtgtgggagatatacagcttaagaagtaactcttggaggaaacttgatttggatatgccttgtggtatgaggactagtgtaggtg 410  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10166 atgtcacgtgatgatgtgtgggagatatacagcttaagaagtaactcttggaggaaacttgatttggatatgccttgtggtatgaggactagtgtaggtg 10265  T
Q  411 tctatgtgtatttgaatggagcgtgtcattggtgggatgacgacgacgatgatgataatgacgcatatttggtgtcatttgacttaagcaaggaggtcgt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10266 tctatgtgtatttgaatggagcgtgtcattggtgggatgacgacgacgacgatgataatgacgcatatttggtgtcatttgacttaagcaaggaggtcgt 10365  T
Q  511 ttgtataacacccatgccctcaactaagattgttaattttgattctggattagagatgagacacttgacggtgttaaatgaccacattgctttgatctca 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10366 ttgtataacacccatgccctcaactaagattgttaattttgattctggattagagatgagacacttgacggtgttaaatgaccacattgctttgatctca 10465  T
Q  611 tattttgaactgtcggctacttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttcattctaaccttacctggcattc 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10466 tattttgaactgtcggctacttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttcattctaaccttacctggcattc 10565  T
Q  711 atcatcctattggagagggaaggaatggtgatttattcttcagaagagatgataacaaactggtttggtttaacttgagaacccagatgatggaggaact 810  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10566 atcatcctattggagagggaaggaatggtgatttattcttcagaagagatgataacaaactggtttggtttaacttgagaacccagatgatggaggaact 10665  T
Q  811 tggtattaaagggc-aatgcattgttgtcaggtagtcatttac-aggaaagccatctttcccttg--agatggaat-gatga-tatttttcc-tttttat 903  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||   ||| |||| | ||| ||||||||| |||||||    
T  10666 tggtattaaagggcaaatgcattgttgtcaggtagtcatttacaaggaaagccatctttcccttggaggattgaatggttgattatttttccttttttat 10765  T
Q  904 ctcagatttcaccctagaggtttatggtaatggt 937  Q
    ||||||||||||||||||||||||||||||||||    
T  10766 ctcagatttcaccctagaggtttatggtaatggt 10799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 475 - 757
Target Start/End: Complemental strand, 33772 - 33487
Alignment:
Q  475 atatttggtgtcatttgacttaagcaaggaggtcgtttgtataacacccatgccctcaactaagattgttaattttgattctggattagagatgagacac 574  Q
    |||| |||||||||||||| ||||||| |||||  |||||| ||||||| |||| |    || || || ||  |||||||||| |||   | ||||| ||    
T  33772 atatctggtgtcatttgacataagcaatgaggtgttttgtacaacacccctgcctttgtatatgaatgatagctttgattctgtatttttgttgagatac 33673  T
Q  575 ttgacggtgttaaatgaccacattgctttgatctcatattttgaactgtcggctacttttcacatatcaattttgggtgaagttggtgtgaaggagtctt 674  Q
    |||| ||| |||||||||||| |||| ||||||||| | | || |     | ||||||||||||| || |||||||||||| ||||||||||||||||||    
T  33672 ttgatggtattaaatgaccacgttgcattgatctcaaactatgtagaaatgactacttttcacatttctattttgggtgaacttggtgtgaaggagtctt 33573  T
Q  675 ggactaaactcttcattct---aaccttacctggcattcatcatcctattggagagggaaggaatggtgatttattcttcagaaga 757  Q
    ||||||||||||| ||| |     | |||||| ||||  | ||||||||||| ||||||| |||||||||| ||||||||||||||    
T  33572 ggactaaactctttattattgggcctttaccttgcatcgagcatcctattggggagggaaagaatggtgatatattcttcagaaga 33487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 475 - 757
Target Start/End: Complemental strand, 17376 - 17091
Alignment:
Q  475 atatttggtgtcatttgacttaagcaaggaggtcgtttgtataacacccatgccctcaactaagattgttaattttgattctggattagagatgagacac 574  Q
    |||| |||||||||||||| ||||||| |||||  |||||| ||||||| |||| |    || || || ||  |||||||||| |||   | ||||| ||    
T  17376 atatctggtgtcatttgacataagcaatgaggtgttttgtacaacacccctgcctttgtatatgaatgatagctttgattctgtatttttgttgagatac 17277  T
Q  575 ttgacggtgttaaatgaccacattgctttgatctcatattttgaactgtcggctacttttcacatatcaattttgggtgaagttggtgtgaaggagtctt 674  Q
    |||| ||| |||||||||||| |||| ||||||||| | | || |     | ||||||||||||| || ||| |||||||| | ||||||||||||||||    
T  17276 ttgatggtattaaatgaccacgttgcattgatctcaaactatgtagaaatgactacttttcacatttctattctgggtgaactcggtgtgaaggagtctt 17177  T
Q  675 ggactaaactcttc---attctaaccttacctggcattcatcatcctattggagagggaaggaatggtgatttattcttcagaaga 757  Q
    ||||||||||||||   |||  | | |||||| ||||| | |||||||| || ||||||| |||||||||| ||||||||| ||||    
T  17176 ggactaaactcttcgttattggacctttaccttgcattgagcatcctatcggggagggaaagaatggtgatctattcttcaaaaga 17091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 17518 - 17466
Alignment:
Q  327 tgtgggagatatacagcttaagaagtaactcttggaggaaacttgatttggat 379  Q
    ||||||||||||||| | ||||||| ||||||||||| ||||||||| |||||    
T  17518 tgtgggagatatacaacctaagaagcaactcttggagaaaacttgatctggat 17466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 33914 - 33862
Alignment:
Q  327 tgtgggagatatacagcttaagaagtaactcttggaggaaacttgatttggat 379  Q
    ||||||||||||||| | ||||||| ||||||||||| ||||||||| |||||    
T  33914 tgtgggagatatacaacctaagaagcaactcttggagaaaacttgatctggat 33862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 8e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 637 - 853
Target Start/End: Complemental strand, 48742044 - 48741824
Alignment:
Q  637 catatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttcattct---aaccttacctggcattcatcatcctattggagagggaagg 733  Q
    |||||||||||| |||||| | ||||||||||| ||||||||||||||||||||| |   | |||||||| ||||| | ||||||||||||||||||||     
T  48742044 catatcaattttaggtgaactcggtgtgaaggaatcttggactaaactcttcatttttggacccttacctagcattgaacatcctattggagagggaagt 48741945  T
Q  734 aatggtgatttattcttcagaagagatgataacaaactggtttggtttaacttgagaacccagatgatggaggaacttggtattaaagggcaa-tgcatt 832  Q
    ||||||||||||||||| |||||| |  || |  |||| || |||||||| ||||  ||||| || || ||||| |||||| |||||||| || ||||||    
T  48741944 aatggtgatttattctttagaagaaaaaatgatgaactagtctggtttaatttgaatacccaaataattgaggagcttggtgttaaaggggaactgcatt 48741845  T
Q  833 gttgtcaggtagtcatttaca 853  Q
    |||||||| ||||||||||||    
T  48741844 gttgtcagatagtcatttaca 48741824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 326 - 385
Target Start/End: Complemental strand, 48742344 - 48742285
Alignment:
Q  326 gtgtgggagatatacagcttaagaagtaactcttggaggaaacttgatttggatatgcct 385  Q
    |||||||||||||||||  ||||||||||||||||||||||| ||||| |||||||||||    
T  48742344 gtgtgggagatatacagtctaagaagtaactcttggaggaaaattgatctggatatgcct 48742285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 573 - 690
Target Start/End: Complemental strand, 9582107 - 9581990
Alignment:
Q  573 acttgacggtgttaaatgaccacattgctttgatctcatattttgaactgtcggctacttttcacatatcaattttgggtgaagttggtgtgaaggagtc 672  Q
    ||||| ||||||||||||    |||||| ||||||||||||  ||||  | || | | |||||||||||||||||||||||||   ||| | ||||||||    
T  9582107 acttggcggtgttaaatgggtccattgcattgatctcatatcatgaagagacgacaaattttcacatatcaattttgggtgaatacggtataaaggagtc 9582008  T
Q  673 ttggactaaactcttcat 690  Q
     ||||| |||||||||||    
T  9582007 atggaccaaactcttcat 9581990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 573 - 690
Target Start/End: Complemental strand, 9587802 - 9587685
Alignment:
Q  573 acttgacggtgttaaatgaccacattgctttgatctcatattttgaactgtcggctacttttcacatatcaattttgggtgaagttggtgtgaaggagtc 672  Q
    ||||| ||||||||||||    |||||| ||||||||||||  ||||  | || | | |||||||||||||||||||||||||   ||| | ||||||||    
T  9587802 acttggcggtgttaaatgggtccattgcattgatctcatatcatgaagagacgacaaattttcacatatcaattttgggtgaatacggtataaaggagtc 9587703  T
Q  673 ttggactaaactcttcat 690  Q
     ||||| |||||||||||    
T  9587702 atggaccaaactcttcat 9587685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 573 - 689
Target Start/End: Original strand, 37897898 - 37898014
Alignment:
Q  573 acttgacggtgttaaatgaccacattgctttgatctcatattttgaactgtcggctacttttcacatatcaattttgggtgaagttggtgtgaaggagtc 672  Q
    ||||| |||||||| ||||   |||||| ||| ||||||||  ||||  | || ||||||||||| ||||| ||||||| ||| ||||| ||||||| ||    
T  37897898 acttggcggtgttatatgagtccattgcattgttctcatatcatgaagagacgactacttttcacgtatcagttttgggcgaacttggtatgaaggaatc 37897997  T
Q  673 ttggactaaactcttca 689  Q
     ||||| ||||||||||    
T  37897998 gtggaccaaactcttca 37898014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 595 - 691
Target Start/End: Complemental strand, 54295183 - 54295087
Alignment:
Q  595 cattgctttgatctcatattttgaactgtcggctacttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttcatt 691  Q
    |||||| ||||||||||||  ||||  |||  ||| ||||||||||||||||||||||||| | |||||||  || || ||||| ||||| ||||||    
T  54295183 cattgcattgatctcatatcatgaagagtccactaattttcacatatcaattttgggtgaattcggtgtgatagaatcgtggaccaaacttttcatt 54295087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 54295458 - 54295401
Alignment:
Q  329 tgggagatatacagcttaagaagtaactcttggaggaaacttgatttggatatgcctt 386  Q
    ||||||||||| |||||||||| |||||| ||||||| ||||||| | || |||||||    
T  54295458 tgggagatatatagcttaagaactaactcatggaggatacttgatgttgacatgcctt 54295401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 627 - 823
Target Start/End: Complemental strand, 44550552 - 44550353
Alignment:
Q  627 ctacttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttcattctaa---ccttacctggcattcatcatcctattgg 723  Q
    |||||||||| ||||||||||| |||||| | ||||||||| | |  |||||||||||||||| ||| |   |||||  | ||||| | |||||||||||    
T  44550552 ctacttttcaaatatcaattttaggtgaattcggtgtgaagaaattatggactaaactcttcactcttagacccttaggttgcattgagcatcctattgg 44550453  T
Q  724 agagggaaggaatggtgatttattcttcagaagagatgataacaaactggtttggtttaacttgagaacccagatgatggaggaacttggtattaaaggg 823  Q
    |||||||| ||||||| |||| |||||||||||| | ||| |  || | ||||||||||| ||||| ||  ||||||| ||||  |||||||||||||||    
T  44550452 agagggaatgaatggtaatttgttcttcagaagaaaagatgatgaattagtttggtttaatttgagtactgagatgattgaggtgcttggtattaaaggg 44550353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 631 - 689
Target Start/End: Original strand, 5162455 - 5162513
Alignment:
Q  631 ttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttca 689  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||  ||||||||||    
T  5162455 ttttcacatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaactcttca 5162513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 627 - 689
Target Start/End: Complemental strand, 42637419 - 42637357
Alignment:
Q  627 ctacttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttca 689  Q
    ||||||||||||||||||||||||||||||| || |||||||| || ||||| ||||||||||    
T  42637419 ctacttttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactcttca 42637357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 629 - 669
Target Start/End: Original strand, 40545118 - 40545158
Alignment:
Q  629 acttttcacatatcaattttgggtgaagttggtgtgaagga 669  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40545118 acttttcacatatcaattttgggtgaagttggtgtgaagga 40545158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 27173805 - 27173761
Alignment:
Q  329 tgggagatatacagcttaagaagtaactcttggaggaaacttgat 373  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||    
T  27173805 tgggagatatacagcctaaaaagtaactcttggaggaaacttgat 27173761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 629 - 689
Target Start/End: Original strand, 31789523 - 31789583
Alignment:
Q  629 acttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttca 689  Q
    ||||| || |||||||||||||||||||||||||||||||| || ||||  ||||||||||    
T  31789523 actttccatatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaactcttca 31789583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 687
Target Start/End: Original strand, 40549282 - 40549336
Alignment:
Q  633 ttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 687  Q
    ||||||||||||||||||||||||| ||||||||||| || ||||  ||||||||    
T  40549282 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctt 40549336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 687
Target Start/End: Original strand, 42413999 - 42414053
Alignment:
Q  633 ttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 687  Q
    ||||||| ||||||||||| ||| ||||||| |||||||| ||||||||||||||    
T  42413999 ttcacatttcaattttgggcgaatttggtgtaaaggagtcatggactaaactctt 42414053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 32642643 - 32642687
Alignment:
Q  329 tgggagatatacagcttaagaagtaactcttggaggaaacttgat 373  Q
    ||||||||||| || |||||||||||||||||||| |||||||||    
T  32642643 tgggagatatatagtttaagaagtaactcttggagaaaacttgat 32642687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 629 - 677
Target Start/End: Complemental strand, 42629697 - 42629649
Alignment:
Q  629 acttttcacatatcaattttgggtgaagttggtgtgaaggagtcttgga 677  Q
    |||||||| |||||||||||||||||||| || ||||||||||| ||||    
T  42629697 acttttcatatatcaattttgggtgaagtcggagtgaaggagtcatgga 42629649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 42782933 - 42782973
Alignment:
Q  333 agatatacagcttaagaagtaactcttggaggaaacttgat 373  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  42782933 agatatacagtctaagaagtaactcttggaggaaacttgat 42782973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 687
Target Start/End: Complemental strand, 15807783 - 15807728
Alignment:
Q  632 tttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 687  Q
    |||||||||||||||||||||||||||||  | || ||||| ||||| ||||||||    
T  15807783 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctt 15807728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 689
Target Start/End: Original strand, 32032881 - 32032932
Alignment:
Q  638 atatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttca 689  Q
    |||||||||| ||||||||||||||||||||| || ||||  ||||||||||    
T  32032881 atatcaatttggggtgaagttggtgtgaaggaatcatggatcaaactcttca 32032932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 629 - 667
Target Start/End: Original strand, 37512898 - 37512936
Alignment:
Q  629 acttttcacatatcaattttgggtgaagttggtgtgaag 667  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  37512898 acttttcacatatcaattttgggtgaggttggtgggaag 37512936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 16228154 - 16228117
Alignment:
Q  53 gttgtattatggaatccaactaacgatgaatttaaggt 90  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  16228154 gttgtattgtggaatccaactaccgatgaatttaaggt 16228117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 568 - 689
Target Start/End: Complemental strand, 32744990 - 32744869
Alignment:
Q  568 gagacacttgacggtgttaaatgaccacattgctttgatctcatattttgaactgtcggctacttttcacatatcaattttgggtgaagttggtgtgaag 667  Q
    |||| ||||| ||||||||||||    |||||| ||||||||||||| ||||  | || |||||||||||||||||||| |||||||  ||||| ||||     
T  32744990 gagaaacttggcggtgttaaatgggtccattgcattgatctcatattatgaaaagacgactacttttcacatatcaattatgggtgagattggtatgaaa 32744891  T
Q  668 gagtcttggactaaactcttca 689  Q
    || || ||||| || |||||||    
T  32744890 gaatcatggaccaatctcttca 32744869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 631 - 691
Target Start/End: Original strand, 29012843 - 29012903
Alignment:
Q  631 ttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttcatt 691  Q
    ||||||||||||||||||||| ||  | ||||||||||| || ||||| ||||||||||||    
T  29012843 ttttcacatatcaattttgggggatttcggtgtgaaggaatcatggaccaaactcttcatt 29012903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 32745250 - 32745206
Alignment:
Q  329 tgggagatatacagcttaagaagtaactcttggaggaaacttgat 373  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||||    
T  32745250 tgggagatatatagcctaagaagtaactcctggaggaaacttgat 32745206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 32961117 - 32961073
Alignment:
Q  329 tgggagatatacagcttaagaagtaactcttggaggaaacttgat 373  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||||    
T  32961117 tgggagatatatagcgtaagaagtaactcgtggaggaaacttgat 32961073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 34258620 - 34258565
Alignment:
Q  329 tgggagatatacagcttaagaagtaactcttggaggaaacttgatttggatatgcc 384  Q
    ||||||||||| |||||||||||||| || |||| |||||||||||| || |||||    
T  34258620 tgggagatatatagcttaagaagtaattcatggaagaaacttgattttgacatgcc 34258565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 631 - 693
Target Start/End: Original strand, 29145307 - 29145369
Alignment:
Q  631 ttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttcattct 693  Q
    ||||||||||||||||||||||| | | ||| ||||||| || ||||| |||||||| |||||    
T  29145307 ttttcacatatcaattttgggtggattaggtatgaaggaatcatggaccaaactctttattct 29145369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 660
Target Start/End: Original strand, 29131315 - 29131348
Alignment:
Q  627 ctacttttcacatatcaattttgggtgaagttgg 660  Q
    ||||||||||||||||||||||||||||| ||||    
T  29131315 ctacttttcacatatcaattttgggtgaatttgg 29131348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 12646834 - 12646878
Alignment:
Q  329 tgggagatatacagcttaagaagtaactcttggaggaaacttgat 373  Q
    ||||||||||||||| | |||||||||||||||||||||||||||    
T  12646834 tgggagatatacagcctcagaagtaactcttggaggaaacttgat 12646878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 12651966 - 12652006
Alignment:
Q  329 tgggagatatacagcttaagaagtaactcttggaggaaact 369  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  12651966 tgggagatatacagcctcagaagtaactcttggaggaaact 12652006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 631 - 687
Target Start/End: Original strand, 12652271 - 12652327
Alignment:
Q  631 ttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 687  Q
    |||||||||||| |||||||||||| |||||||  |||| || ||||||||||||||    
T  12652271 ttttcacatatcgattttgggtgaaattggtgttgaggaatcgtggactaaactctt 12652327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 687
Target Start/End: Complemental strand, 3367919 - 3367860
Alignment:
Q  628 tacttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 687  Q
    |||||| |||||||||||||| ||||||||||| || || ||||| ||||| ||||||||    
T  3367919 tactttccacatatcaattttaggtgaagttggggtcaaagagtcatggaccaaactctt 3367860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 638 - 688
Target Start/End: Original strand, 24466340 - 24466390
Alignment:
Q  638 atatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttc 688  Q
    |||||||||||||||||| ||||||| ||||| ||||||| || |||||||    
T  24466340 atatcaattttgggtgaatttggtgttaaggaatcttggattagactcttc 24466390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 369
Target Start/End: Complemental strand, 12516901 - 12516864
Alignment:
Q  332 gagatatacagcttaagaagtaactcttggaggaaact 369  Q
    |||||||||||| | |||||||||||||||||||||||    
T  12516901 gagatatacagccttagaagtaactcttggaggaaact 12516864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 687
Target Start/End: Complemental strand, 44937866 - 44937806
Alignment:
Q  627 ctacttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 687  Q
    ||||||||||||||||||||||||||||| | || ||||| || || ||||||||||||||    
T  44937866 ctacttttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctt 44937806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 627 - 666
Target Start/End: Complemental strand, 7488823 - 7488784
Alignment:
Q  627 ctacttttcacatatcaattttgggtgaagttggtgtgaa 666  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  7488823 ctacttttcacatatcaattttgggtgaaattggtgtgaa 7488784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 632 - 687
Target Start/End: Complemental strand, 44912585 - 44912530
Alignment:
Q  632 tttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 687  Q
    ||||||||||| |||||||||||| ||||||||||||| || || |||||||||||    
T  44912585 tttcacatatcgattttgggtgaacttggtgtgaaggaatcgtgaactaaactctt 44912530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 627 - 689
Target Start/End: Complemental strand, 7498963 - 7498901
Alignment:
Q  627 ctacttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttca 689  Q
    |||||||||||||||||||||||| |||| |||  ||||| || || ||||||||||||||||    
T  7498963 ctacttttcacatatcaattttggatgaaattgacgtgaaagaatcatggactaaactcttca 7498901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 631 - 687
Target Start/End: Complemental strand, 44918551 - 44918495
Alignment:
Q  631 ttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 687  Q
    |||||||||||||||||| |||||| |||||| ||| || || ||||||||||||||    
T  44918551 ttttcacatatcaattttaggtgaacttggtgggaaagaatcgtggactaaactctt 44918495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 327 - 373
Target Start/End: Original strand, 16920700 - 16920746
Alignment:
Q  327 tgtgggagatatacagcttaagaagtaactcttggaggaaacttgat 373  Q
    ||||||||||||| ||  |||||||||| ||||||||||||||||||    
T  16920700 tgtgggagatatatagtctaagaagtaattcttggaggaaacttgat 16920746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 664
Target Start/End: Original strand, 7530337 - 7530374
Alignment:
Q  627 ctacttttcacatatcaattttgggtgaagttggtgtg 664  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  7530337 ctacttttcagatatcaattttgggtgaacttggtgtg 7530374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 691
Target Start/End: Original strand, 368802 - 368866
Alignment:
Q  627 ctacttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttcatt 691  Q
    |||||||||||||||||||| | |||||| ||||||||||||| || ||||  ||||||||||||    
T  368802 ctacttttcacatatcaattcttggtgaaattggtgtgaaggaatcatggatcaaactcttcatt 368866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 22535551 - 22535507
Alignment:
Q  329 tgggagatatacagcttaagaagtaactcttggaggaaacttgat 373  Q
    ||||||||||||||| | |||||||||||||||||||||||||||    
T  22535551 tgggagatatacagccttagaagtaactcttggaggaaacttgat 22535507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 344828 - 344874
Alignment:
Q  329 tgggagatatacagcttaagaagtaactcttggaggaaacttgattt 375  Q
    ||||||||||||||  ||| |||||||||||||| ||||||||||||    
T  344828 tgggagatatacagtctaaaaagtaactcttggaagaaacttgattt 344874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 42445888 - 42445937
Alignment:
Q  152 cttcatggatttggttatgacagtgttagcgacgactataaggtgattcg 201  Q
    ||||||||||||||||||||||||||||  || ||||||||||| |||||    
T  42445888 cttcatggatttggttatgacagtgttacagatgactataaggtcattcg 42445937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 691
Target Start/End: Original strand, 25628199 - 25628258
Alignment:
Q  632 tttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttcatt 691  Q
    |||||||||||| |||| |||||| |||||||||  || || ||||||||||||||||||    
T  25628199 tttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactcttcatt 25628258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 631 - 677
Target Start/End: Original strand, 45866863 - 45866909
Alignment:
Q  631 ttttcacatatcaattttgggtgaagttggtgtgaaggagtcttgga 677  Q
    |||||||||||||||||| |||||| |||| ||||||||||| ||||    
T  45866863 ttttcacatatcaattttaggtgaaattggagtgaaggagtcatgga 45866909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 33833 - 33789
Alignment:
Q  329 tgggagatatacagcttaagaagtaactcttggaggaaacttgat 373  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||||    
T  33833 tgggagatatatagcctaagaagtaactcgtggaggaaacttgat 33789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 627 - 661
Target Start/End: Complemental strand, 16296 - 16262
Alignment:
Q  627 ctacttttcacatatcaattttgggtgaagttggt 661  Q
    ||||||||||||||||||||||||||||| |||||    
T  16296 ctacttttcacatatcaattttgggtgaaattggt 16262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 660
Target Start/End: Original strand, 204 - 237
Alignment:
Q  627 ctacttttcacatatcaattttgggtgaagttgg 660  Q
    ||||||||||||||||||||||||||||| ||||    
T  204 ctacttttcacatatcaattttgggtgaaattgg 237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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