View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2780_high_3 (Length: 336)
Name: NF2780_high_3
Description: NF2780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2780_high_3 |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: scaffold0129 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 29 - 336
Target Start/End: Original strand, 9866 - 10173
Alignment:
| Q |
29 |
gttattaacggaattgtttgtctttaccatagtggtacaaatgttgtattatggaatccaactaacgatgaatttaaggtccttcctgaaagccctactg |
128 |
Q |
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| T |
9866 |
gttattaacggaattgtttgtctttaccaaagtggtacaaatgttgtattatggaatccaactaacggcgaatttaaggtgcttcctgaaagtcctactg |
9965 |
T |
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| Q |
129 |
atttagagccctcagtacgttatgagattgaactggaacgacttcatggatttggttacgacagtgttagcgacgactataaggtgattcgccatgtaca |
228 |
Q |
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| T |
9966 |
agttagagccctcagtacgttatgagattgaactggaacgacttcatggatttggttatgacagtgttagcgacgactataaggtgattcgccatgtaca |
10065 |
T |
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| Q |
229 |
gtatgaactgaatttatccgactatgaaaatgaagatagcgactttgaaggtgatgcgttatctgactatgaaagtgatgcggtaagtctgccaactagc |
328 |
Q |
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| T |
10066 |
gtatgaactgaatttatccgactatgaaaatgatgatagcgactttgaaggtgatgcgttatctgactatgaaagcgatgcggtaagtctgccaactagc |
10165 |
T |
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| Q |
329 |
atgtcacg |
336 |
Q |
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| T |
10166 |
atgtcacg |
10173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 42565485 - 42565439
Alignment:
| Q |
173 |
catggatttggttacgacagtgttagcgacgactataaggtgattcg |
219 |
Q |
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| T |
42565485 |
catggatttggttacgactgtgttagagatgactataagttgattcg |
42565439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 16228154 - 16228117
Alignment:
| Q |
71 |
gttgtattatggaatccaactaacgatgaatttaaggt |
108 |
Q |
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| T |
16228154 |
gttgtattgtggaatccaactaccgatgaatttaaggt |
16228117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 42445888 - 42445937
Alignment:
| Q |
170 |
cttcatggatttggttacgacagtgttagcgacgactataaggtgattcg |
219 |
Q |
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| T |
42445888 |
cttcatggatttggttatgacagtgttacagatgactataaggtcattcg |
42445937 |
T |
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