View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2780_high_4 (Length: 317)
Name: NF2780_high_4
Description: NF2780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2780_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 7902470 - 7902183
Alignment:
| Q |
1 |
acctccactactgtcatgttgtgacccgcaatggcaaagaaaagctcatcgttgagggcagcgttgacgattctcatgaggtatgtcttcccttgttcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7902470 |
acctccactactgtcatgttgtgacccgcaatggcaaagaaaagctcatcgttgagggcagcgttgacgattctcatgaggtatgtcttcccttgttcta |
7902371 |
T |
|
| Q |
101 |
cctccattgcaaatgtgtctagaaaatcgaagcaaattaattgaacttcaaataaagattttattctcttgtaaatataattaaatattttgtatttgta |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7902370 |
cctccattgcaaatgtgtctagaaaattgaagcaaattaattgaacttcaaataaagaatttattctcttgtaactataattaaatattttgtatttgta |
7902271 |
T |
|
| Q |
201 |
caaattgtattcagcctgttaattagatctacggtatagcatagtctatttaaaactgtgctcgactaatttttcttacgcttctcag |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7902270 |
caaattgtattcagcctgttaattagatctacggtatagcatagtctatttaaaactgtgctcgactaatttttcttacgcttctcag |
7902183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 7892191 - 7892072
Alignment:
| Q |
7 |
actactgtcatgttgtgacccgcaatggcaaagaaaagctcatcgttgagggcagcgttgacgattctcatgaggtatgtcttcccttgttctacctcca |
106 |
Q |
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|||||||||||||||||||| |||| || ||||||||||||||| || ||||| || |||| |||||| | || |||||||| || | || ||||||| |
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| T |
7892191 |
actactgtcatgttgtgaccagcaagggaaaagaaaagctcatcattaagggctgcattgatgattcttagcagatatgtcttgcccttctcaacctcca |
7892092 |
T |
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| Q |
107 |
ttgcaaatgtgtctagaaaa |
126 |
Q |
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||||| |||| ||||||||| |
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| T |
7892091 |
ttgcatatgtatctagaaaa |
7892072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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