View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2780_low_1 (Length: 561)
Name: NF2780_low_1
Description: NF2780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2780_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 19 - 553
Target Start/End: Original strand, 7902183 - 7902717
Alignment:
| Q |
19 |
ctgagaagcgtaagaaaaattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaatacaatttgtacaaatacaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902183 |
ctgagaagcgtaagaaaaattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaatacaatttgtacaaatacaaa |
7902282 |
T |
|
| Q |
119 |
atatttaattatatttacaagagaataaaatctttatttgaagttcaattaatttgcttcaattttctagacacatttgcaatggaggtagaacaaggga |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902283 |
atatttaattatagttacaagagaataaattctttatttgaagttcaattaatttgcttcaattttctagacacatttgcaatggaggtagaacaaggga |
7902382 |
T |
|
| Q |
219 |
agacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtagtggaggttgatgctgttta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902383 |
agacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtagtggaggttgatgctgttta |
7902482 |
T |
|
| Q |
319 |
tacaaaaccattcaccactcaggctatactaattgctcctggtcaaaccacaaacgttctggttcatgccaatcaagttgctggtaggtactttgtggcc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902483 |
tacaaaaccattcaccactcaggctatactaattgctcctggtcaaaccacaaacgttctggttcatgccaatcaagttgctggtaggtactttgtggcc |
7902582 |
T |
|
| Q |
419 |
accaaggcttttatggatgccccaattcaagttgacaacaaaactgctacagctatacttcaatacaaagacatcccaaacactgtccaacccatccttc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902583 |
accaaggcttttatggatgccccaattcaagttgacaacaaaactgctacagctatacttcaatacaaagacatcccaaacactgtccaacccatccttc |
7902682 |
T |
|
| Q |
519 |
cacagttgccagctagcaatgacacaggttctgct |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
7902683 |
cacagttgccagctagcaatgacacaggttttgct |
7902717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 181 - 378
Target Start/End: Original strand, 7892072 - 7892269
Alignment:
| Q |
181 |
ttttctagacacatttgcaatggaggtagaacaagggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcg |
280 |
Q |
| |
|
||||||||| |||| |||||||||||| || | || |||||||| || | |||||| |||| || ||||| || ||||||||||||||| || |||| |
|
|
| T |
7892072 |
ttttctagatacatatgcaatggaggttgagaagggcaagacatatctgctaagaatcatcaatgcagcccttaatgatgagcttttcttttcccttgct |
7892171 |
T |
|
| Q |
281 |
ggtcacaacatgacagtagtggaggttgatgctgtttatacaaaaccattcaccactcaggctatactaattgctcctggtcaaaccacaaacgttct |
378 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||| |||||||||||||| || || | || ||||||| |||||||||||||||||| ||||| |
|
|
| T |
7892172 |
ggtcacaacatgacagtagttgaagttgatgcagtttacacaaaaccattcacaacacaatccattctaattggtcctggtcaaaccacaaatgttct |
7892269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University