View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2781_low_2 (Length: 240)
Name: NF2781_low_2
Description: NF2781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2781_low_2 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 142711 - 142482
Alignment:
| Q |
1 |
atgaaatcattttcctgttcagattctttagcttttctcnnnnnnngttccattatgaaaactgagtctaacaaaatcatttccaaaaacttctcatcct |
100 |
Q |
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| T |
142711 |
atgaaatcattttcctgttcagattctttaacttttctcaaaaaaagttccattatgaaaactgagtctaacaaaatcatttccaaaaacttctcatccg |
142612 |
T |
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| Q |
101 |
tacaaagttcttgtttggaataacaattacaaatattttctcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttattagataa |
200 |
Q |
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| T |
142611 |
tacaaagttcttgtttggaataacaattacaaatattttttcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttattagataa |
142512 |
T |
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| Q |
201 |
acgtttccaaaatgcatgaaaatacctttg |
230 |
Q |
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| T |
142511 |
acgtttccaaaatgcatgaaaatacctttg |
142482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 45960961 - 45961190
Alignment:
| Q |
1 |
atgaaatcattttcctgttcagattctttagcttttctcnnnnnnngttccattatgaaaactgagtctaacaaaatcatttccaaaaacttctcatcct |
100 |
Q |
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| T |
45960961 |
atgaaatcatttttctgttcagattctttagcttttctcaaaaacaactccattatgaaaactgagtctaacaaaatcatttccaaaaacttctcatcct |
45961060 |
T |
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| Q |
101 |
tacaaagttcttgtttggaataacaattacaaatattttctcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttattagataa |
200 |
Q |
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| T |
45961061 |
tgcgaagttcttgtttggaataacaattaccaatattttctctattttcttcaagaaaagctttatattctaccaaagctaaagtttgtttatttgacaa |
45961160 |
T |
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| Q |
201 |
acgtttccaaaatgcatgaaaatacctttg |
230 |
Q |
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| T |
45961161 |
acgtttccaaaatgcatgaaagtagctttg |
45961190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 297917 - 297724
Alignment:
| Q |
1 |
atgaaatcattttcctgttcagattctttagcttttctcnnnnnnngt-tccattatgaaaactgagtctaacaaaatcatttccaaaaacttctcatcc |
99 |
Q |
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| T |
297917 |
atgaaatcatctttctgttcagattctttagcttttctcaaaaaacaactccattatgaaaactgagtctaacaaaatcatttccaaaagcttctcatcc |
297818 |
T |
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| Q |
100 |
ttacaaagttcttgtttggaataacaattacaaatattttctcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttat |
193 |
Q |
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| T |
297817 |
ttgcaaagttcttgtttggaataaaaattaccaatattttctctgttttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttat |
297724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 230
Target Start/End: Original strand, 27123741 - 27123916
Alignment:
| Q |
49 |
tccattatgaaaactgagtctaacaaaatcatttccaaaaacttctcatccttacaaagttcttgtttggaataacaattacaaatattttctcggtttt |
148 |
Q |
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||||| ||||||||||||||||||||||| ||||| ||||| || || | |||| |||| | ||||||||||| |||| |||||||| | ||||| |
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| T |
27123741 |
tccatgatgaaaactgagtctaacaaaatatattccacaaactgatccaccatccaaacttctggcttggaataacagttacttatattttcactgtttt |
27123840 |
T |
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| Q |
149 |
cttcaagaaaagctttatattgtaccaaagctaaagtttgtttattagataaacgtttccaaaatgcatgaaaatacctttg |
230 |
Q |
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| T |
27123841 |
attcaaggaaagctttatatcgtcccaaagc------ctgtttatttgataaacatttccaaaatgaatgaaagtacttttg |
27123916 |
T |
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