View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2782_high_1 (Length: 498)

Name: NF2782_high_1
Description: NF2782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2782_high_1
NF2782_high_1
[»] chr5 (6 HSPs)
chr5 (19-246)||(36192361-36192588)
chr5 (281-400)||(34732299-34732418)
chr5 (241-400)||(32487132-32487291)
chr5 (241-430)||(2866764-2866955)
chr5 (435-494)||(36192883-36192942)
chr5 (431-482)||(16948337-16948388)
[»] chr4 (5 HSPs)
chr4 (19-246)||(7281547-7281774)
chr4 (320-400)||(22228423-22228503)
chr4 (241-400)||(55406503-55406662)
chr4 (431-482)||(56193650-56193701)
chr4 (198-246)||(53722836-53722882)
[»] chr3 (6 HSPs)
chr3 (244-405)||(1539622-1539782)
chr3 (241-431)||(2455819-2456009)
chr3 (244-340)||(50761123-50761219)
chr3 (348-395)||(50763234-50763281)
chr3 (431-478)||(23624894-23624941)
chr3 (324-400)||(19466163-19466239)
[»] chr2 (3 HSPs)
chr2 (244-431)||(38120845-38121032)
chr2 (241-430)||(40934653-40934844)
chr2 (435-482)||(44285372-44285419)
[»] chr8 (3 HSPs)
chr8 (319-396)||(12568105-12568182)
chr8 (241-398)||(38545597-38545754)
chr8 (283-400)||(30773517-30773638)
[»] scaffold0343 (1 HSPs)
scaffold0343 (241-400)||(8241-8399)
[»] chr6 (2 HSPs)
chr6 (431-481)||(27739239-27739289)
chr6 (441-482)||(6086921-6086962)
[»] chr1 (2 HSPs)
chr1 (431-470)||(34501172-34501211)
chr1 (346-398)||(34501409-34501461)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 36192361 - 36192588
Alignment:
Q  19 gttatagtatcaatatcttaatttgtttttccatcaannnnnnncttcttcttttgagtagttcgaatttcatccacaaaaccacaccaagttcatagta 118  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36192361 gttatagtatcaatatcttaatttgtttttccatcaatttttttcttcttcttttgagtagttcgaatttcatccacaaaaccacaccaagttcatagta 36192460  T
Q  119 gaaaatggaagtgttagttttaagagatagaagtggtaaaatggtacagatgaatttaatttcattttgggtagttatgaatttcatcaacaaagaataa 218  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36192461 gaaaatggaagtgtaagttttaagagatagaagtggtaaaatggtacagatgaatttaatttcattttgggtagttatgaatttcatcaacaaagaataa 36192560  T
Q  219 aaggagaaaaatatgatatgaatcaatt 246  Q
    |||||||||||||||||||||| |||||    
T  36192561 aaggagaaaaatatgatatgaaacaatt 36192588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 281 - 400
Target Start/End: Complemental strand, 34732418 - 34732299
Alignment:
Q  281 caatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaattcataattttgttaataacttaaaacggatttatatata 380  Q
    |||| |||||||||||||  |||||||   ||||||  | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34732418 caataggaattgaaccactgttctctatggtagttttagaaaaataaaccactaggctaattcataattttgttaatatcttaaaacggatttatatata 34732319  T
Q  381 ttctaaaaatatttggcacc 400  Q
    ||||||||| ||||||||||    
T  34732318 ttctaaaaacatttggcacc 34732299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 400
Target Start/End: Original strand, 32487132 - 32487291
Alignment:
Q  241 tcaattgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 340  Q
    ||||||||||||||||||||||||||       ||| ||  ||||||||| |||||||| ||| ||| | | ||| | ||||||||||||||||||||||    
T  32487132 tcaattgtattattaatactttactcaaaaaaagaggtcctaatgggaatcgaaccaccgttccctatagttgttccaggaaaataaaccactaggctaa 32487231  T
Q  341 ttcataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcacc 400  Q
    ||||| ||||  ||||||  ||||||| ||| ||||||||||||||||||||||||||||    
T  32487232 ttcattatttcattaatattttaaaactgatatatatatattctaaaaatatttggcacc 32487291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 241 - 430
Target Start/End: Complemental strand, 2866955 - 2866764
Alignment:
Q  241 tcaattgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 340  Q
    ||||||||||||||||||||||||||       ||| ||  ||||||||| |||||||| ||| ||| | | ||||| ||||||||||||||||||||||    
T  2866955 tcaattgtattattaatactttactcaaaaaaagaggtcctaatgggaatcgaaccaccgttccctatagttgtttcaggaaaataaaccactaggctaa 2866856  T
Q  341 ttcataattttgttaataacttaaaacgg--atttatatatattctaaaaatatttggcaccttcagnnnnnnngttcaagatccgccactg 430  Q
    ||||| ||||   |||||  ||||||| |  || ||||||||||||||||||||||||||||  |||       ||||||||||||||||||    
T  2866855 ttcattatttcactaatattttaaaactgatatatatatatattctaaaaatatttggcacccccagaaaaaaagttcaagatccgccactg 2866764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 435 - 494
Target Start/End: Original strand, 36192883 - 36192942
Alignment:
Q  435 ccaagttacctataattatcgtattatccataatttatcaaatgttacgtctgtgctgct 494  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  36192883 ccaagttacctataattatcgtattatccataatttatcgaatgttacgtccgtgttgct 36192942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 16948388 - 16948337
Alignment:
Q  431 gcccccaagttacctataattatcgtattatccataatttatcaaatgttac 482  Q
    |||| ||||||||||||||||||| ||||||||||||||||||| |||||||    
T  16948388 gccctcaagttacctataattatcatattatccataatttatcatatgttac 16948337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 7281547 - 7281774
Alignment:
Q  19 gttatagtatcaatatcttaatttgtttttccatcaannnnnnncttcttcttttgagtagttcgaatttcatccacaaaaccacaccaagttcatagta 118  Q
    |||||| ||||||||  ||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  7281547 gttatattatcaatactttaatttgtttttccatcaatttttttcttcttctttcgagtagttcgaatttcatccacaaaaccacaacaagttcatagta 7281646  T
Q  119 gaaaatggaagtgttagttttaagagatagaagtggtaaaatggtacagatgaatttaatttcattttgggtagttatgaatttcatcaacaaagaataa 218  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  7281647 gaaaatggaagtgtaagttttaagagatagaagtggtaaaatggaacagatgaatttaatttcattttggggagttatgactttcatcaacaaagaataa 7281746  T
Q  219 aaggagaaaaatatgatatgaatcaatt 246  Q
    |||||||||||||| |||||||||||||    
T  7281747 aaggagaaaaatattatatgaatcaatt 7281774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 320 - 400
Target Start/End: Original strand, 22228423 - 22228503
Alignment:
Q  320 gaaaataaaccactaggctaattcataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcacc 400  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  22228423 gaaaataaaccactaggctaattcataattttattaatatcttaaaacggatttatatatattctaataatatttggcacc 22228503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 400
Target Start/End: Complemental strand, 55406662 - 55406503
Alignment:
Q  241 tcaattgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 340  Q
    ||||||||||||||||||||||||||       ||| ||  ||||||||| |||||||| ||| ||| | | ||| | ||||||||||||||||||||||    
T  55406662 tcaattgtattattaatactttactcaaaagaagaggtcctaatgggaatcgaaccaccgttccctatagttgttccaggaaaataaaccactaggctaa 55406563  T
Q  341 ttcataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcacc 400  Q
    ||||| ||||  ||||||  ||||||| ||| ||||||||||||||||||||||||||||    
T  55406562 ttcattatttcattaatattttaaaactgatatatatatattctaaaaatatttggcacc 55406503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 431 - 482
Target Start/End: Original strand, 56193650 - 56193701
Alignment:
Q  431 gcccccaagttacctataattatcgtattatccataatttatcaaatgttac 482  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  56193650 gcccccaatttacctataattatcatattatccataatttatcaaatgttac 56193701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 53722882 - 53722836
Alignment:
Q  198 aatttcatcaacaaagaataaaaggagaaaaatatgatatgaatcaatt 246  Q
    ||||||||||||||||||  |||||||||||| |||||||| |||||||    
T  53722882 aatttcatcaacaaagaa--aaaggagaaaaacatgatatggatcaatt 53722836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 244 - 405
Target Start/End: Original strand, 1539622 - 1539782
Alignment:
Q  244 attgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaattc 343  Q
    |||||||||||||||||||||||       ||| |  |||||||||||||||||| ||||||||   ||||||| |||||||||||||||||||||||||    
T  1539622 attgtattattaatactttactcaaaaaaagaggttccaatgggaattgaaccac-attctctatggtagtttcaggaaaataaaccactaggctaattc 1539720  T
Q  344 ataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcaccttcag 405  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  1539721 ataattttgtcaataacttaaaacggatttatatatattctaaacatatttggcaccctcag 1539782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 241 - 431
Target Start/End: Original strand, 2455819 - 2456009
Alignment:
Q  241 tcaattgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 340  Q
    ||||||||||||||||||||||||||       ||| ||  |||||||||||||||||| ||| ||| | | ||| | ||||||||||||||||||||||    
T  2455819 tcaattgtattattaatactttactcaaaaaaagaggtcctaatgggaattgaaccaccgttccctatagttgttccaggaaaataaaccactaggctaa 2455918  T
Q  341 ttcataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcaccttcagnnnnnnngttcaagatccgccactgg 431  Q
    ||||| ||||  ||||||  ||||||| ||| ||||||||||||||||||||||||||||  |||       |||||||||||||||||||    
T  2455919 ttcattatttcattaatattttaaaactgatatatatatattctaaaaatatttggcacccccagaaaaaaagttcaagatccgccactgg 2456009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 340
Target Start/End: Original strand, 50761123 - 50761219
Alignment:
Q  244 attgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 340  Q
    |||||||||||||||||||||||       ||| || ||||||||||||||||||  |||||||   ||||||| ||||||||||||||||| ||||    
T  50761123 attgtattattaatactttactcaaaaaaagaggtcccaatgggaattgaaccactgttctctatggtagtttcaggaaaataaaccactagactaa 50761219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 395
Target Start/End: Original strand, 50763234 - 50763281
Alignment:
Q  348 ttttgttaataacttaaaacggatttatatatattctaaaaatatttg 395  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||    
T  50763234 ttttattaataacttaaaacggatttatatatattctaaacatatttg 50763281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 478
Target Start/End: Complemental strand, 23624941 - 23624894
Alignment:
Q  431 gcccccaagttacctataattatcgtattatccataatttatcaaatg 478  Q
    |||||||| |||||||||| |||| |||||||||||||||||||||||    
T  23624941 gcccccaaattacctataactatcatattatccataatttatcaaatg 23624894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 400
Target Start/End: Complemental strand, 19466239 - 19466163
Alignment:
Q  324 ataaaccactaggctaattcataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcacc 400  Q
    |||||||||||| ||||||| ||||| ||||||||    ||||| | || ||||||||||  |||||||||||||||    
T  19466239 ataaaccactagactaattcttaattctgttaatattccaaaactgtttaatatatattcataaaatatttggcacc 19466163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 244 - 431
Target Start/End: Original strand, 38120845 - 38121032
Alignment:
Q  244 attgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaattc 343  Q
    ||||||||||||||||||||||        ||| || |||||||| |||||||||| |||||||   ||||| | |||||||||||||||||||||||||    
T  38120845 attgtattattaatactttactaaaacaaagaggtcccaatgggatttgaaccaccgttctctatggtagttccaggaaaataaaccactaggctaattc 38120944  T
Q  344 ataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcaccttcagnnnnnnngttcaagatccgccactgg 431  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||  |||       |||||||||||||||||||    
T  38120945 ataattttgttaatatcttaaaacagatttatatatattttaaaaataattggcacccccagaaaaaaagttcaagatccgccactgg 38121032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 241 - 430
Target Start/End: Complemental strand, 40934844 - 40934653
Alignment:
Q  241 tcaattgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 340  Q
    ||||||||||||||||||||||||||       ||| ||  | ||||||| |||||||| ||| ||| | | |||   ||||||||||||||||||||||    
T  40934844 tcaattgtattattaatactttactcaaaaaaagaggtcttactgggaatcgaaccaccgttccctatagttgttctaggaaaataaaccactaggctaa 40934745  T
Q  341 ttcataattttgttaataacttaaaacgg--atttatatatattctaaaaatatttggcaccttcagnnnnnnngttcaagatccgccactg 430  Q
    ||||| ||||  ||||||  ||||||| |  || ||||||||||||||||||||||||||||  |||       ||||||||||||||||||    
T  40934744 ttcattatttcattaatattttaaaactgatatatatatatattctaaaaatatttggcacccccagaaaaaaagttcaagatccgccactg 40934653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 482
Target Start/End: Original strand, 44285372 - 44285419
Alignment:
Q  435 ccaagttacctataattatcgtattatccataatttatcaaatgttac 482  Q
    |||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  44285372 ccaagttacctataattatcatattgtccataatttgtcaaaagttac 44285419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 12568182 - 12568105
Alignment:
Q  319 ggaaaataaaccactaggctaattcataattttgttaataacttaaaacggatttatatatattctaaaaatatttgg 396  Q
    ||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  12568182 ggaaaataaactactaagctaattcataatttcgttaatatcttaaaacggatttatatatattctaaaaatatttgg 12568105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 398
Target Start/End: Complemental strand, 38545754 - 38545597
Alignment:
Q  241 tcaattgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 340  Q
    |||||||||||||||||||||||||        ||| ||  |||||||||  ||||||| ||| ||| | | ||| | |||||||||||||||| |||||    
T  38545754 tcaattgtattattaatactttactaaaaaaaagaggtcctaatgggaatcaaaccaccgttccctatagttgttccaggaaaataaaccactacgctaa 38545655  T
Q  341 ttcataattttgttaataacttaaaacggatttatatatattctaaaaatatttggca 398  Q
    ||||| ||||  ||||||  ||||||| ||| ||||||||||||||||||||||||||    
T  38545654 ttcattatttcattaatattttaaaactgatatatatatattctaaaaatatttggca 38545597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 400
Target Start/End: Original strand, 30773517 - 30773638
Alignment:
Q  283 atgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaattcataattttgttaat----aacttaaaacggatttatata 378  Q
    ||||||||||||||||| || ||||   | || || ||| |||||| || ||| |||||||||||||||||| ||    | |||||||| ||||||||||    
T  30773517 atgggaattgaaccaccgttttctatggtggtctcaggacaataaatcattagactaattcataattttgtttatatcaatcttaaaacagatttatata 30773616  T
Q  379 tattctaaaaatatttggcacc 400  Q
    ||||||||||||||||||||||    
T  30773617 tattctaaaaatatttggcacc 30773638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 400
Target Start/End: Complemental strand, 8399 - 8241
Alignment:
Q  241 tcaattgtattattaatactttactcnnnnnnngagatcgcaatgggaattgaaccaccattctctacattagtttctggaaaataaaccactaggctaa 340  Q
    ||||||||||||||||||||||||||       ||| ||  |||||||||  ||||||| ||| ||| | | ||| | ||||||||||||||||||||||    
T  8399 tcaattgtattattaatactttactcaaaaaaagaggtcctaatgggaatcaaaccacc-ttccctatagttgttccaggaaaataaaccactaggctaa 8301  T
Q  341 ttcataattttgttaataacttaaaacggatttatatatattctaaaaatatttggcacc 400  Q
    ||||| ||||  ||||||  ||||||| ||| ||||||||||| ||||||||||||||||    
T  8300 ttcattatttcattaatattttaaaactgatatatatatattcaaaaaatatttggcacc 8241  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 481
Target Start/End: Complemental strand, 27739289 - 27739239
Alignment:
Q  431 gcccccaagttacctataattatcgtattatccataatttatcaaatgtta 481  Q
    |||||||| ||||||||||||||| ||||||||||| ||||||| ||||||    
T  27739289 gcccccaaattacctataattatcatattatccatactttatcatatgtta 27739239  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Original strand, 6086921 - 6086962
Alignment:
Q  441 tacctataattatcgtattatccataatttatcaaatgttac 482  Q
    |||||||||||||| ||||||||||||| ||||| |||||||    
T  6086921 tacctataattatcatattatccataatatatcatatgttac 6086962  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 34501172 - 34501211
Alignment:
Q  431 gcccccaagttacctataattatcgtattatccataattt 470  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  34501172 gcccccaagttacctataattatcatattatccgtaattt 34501211  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 398
Target Start/End: Original strand, 34501409 - 34501461
Alignment:
Q  346 aattttgttaataacttaaaacggatttatatatattctaaaaatatttggca 398  Q
    |||||||||| || |||||||| | || ||||||||||| |||||||||||||    
T  34501409 aattttgttagtatcttaaaactgtttaatatatattctgaaaatatttggca 34501461  T

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