View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2782_low_2 (Length: 491)
Name: NF2782_low_2
Description: NF2782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2782_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Original strand, 7568609 - 7569074
Alignment:
| Q |
19 |
ggatcagttattggatttttgggagcagctttgggaagtgttggaggtgtaggaggtggtggaatttttgtccctatgcttgctttgatcattggctttg |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7568609 |
ggatcaattattggatttttgggagcagctttgggaagtgttggaggtgtaggaggtggtggaatttttgtccctatgcttgctttgatcattggctttg |
7568708 |
T |
|
| Q |
119 |
atcccaagtcttctacagccatttccaagtgtaannnnnnnnnnnnnnnnnnattagtatgcttttttatcgttaggaatatgaactcgatacttcagaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
7568709 |
atcccaagtcttctacagccatttccaagtgtaagtgtgtgtgtgtgtgtgtattagtatgcttttttatcggtaggaatatgaactcgatactccagaa |
7568808 |
T |
|
| Q |
219 |
tttacaacactcacaccgacactgctcatcaactaattgcgctagaccttgctggtccggcttatattcttgattgataatcatatatatagtataacaa |
318 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7568809 |
tttacaacactcacaccgacactgctcatcagctaattgcgctagaccttgctggtccggcttatattcttgattaataatcatatatatagtataacaa |
7568908 |
T |
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| Q |
319 |
taataattttggattcttgaatatatcatatctttgatttgataattgcaggtatgattatgggtgcagcattatcaactgtttactacaatatgaggct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7568909 |
taataattttggattcttgaatatatcatatctttgatttgataattgcaggtatgattatgggtgcagcattatcaactgtttactacaatatgaggct |
7569008 |
T |
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| Q |
419 |
tagaaacccaacactagacatgccacttatagattatgatttggctttgcttttccagcctatgct |
484 |
Q |
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| T |
7569009 |
tagaaacccaacactagacatgccacttatagattatgatttggctttgcttttccagcctatgct |
7569074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 33126794 - 33126687
Alignment:
| Q |
31 |
ggatttttgggagcagctttgggaagtgttggaggtgtaggaggtggtggaatttttgtccctatgcttgctttgatcattggctttgatcccaagtctt |
130 |
Q |
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|||||||| |||||||| ||||||||||| ||||| ||||||||||| ||||||||| |||||||||| ||||||||||||| |||||||| ||||||| |
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| T |
33126794 |
ggattttttggagcagcattgggaagtgtaggaggggtaggaggtggaggaatttttatccctatgctcactttgatcattggttttgatccaaagtctt |
33126695 |
T |
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| Q |
131 |
ctacagcc |
138 |
Q |
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|||||||| |
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| T |
33126694 |
ctacagcc |
33126687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 363 - 484
Target Start/End: Complemental strand, 33126392 - 33126271
Alignment:
| Q |
363 |
attgcaggtatgattatgggtgcagcattatcaactgtttactacaatatgaggcttagaaacccaacactagacatgccacttatagattatgatttgg |
462 |
Q |
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|||||||||||||||| || ||||| |||||||| || |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | | |
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| T |
33126392 |
attgcaggtatgattacaggagcagctgggtcaactgtgtattacaatctgaggcttagacacccaacactagacatgccacttatagattatgatcttg |
33126293 |
T |
|
| Q |
463 |
ctttgcttttccagcctatgct |
484 |
Q |
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||||||| |||||||||||||| |
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| T |
33126292 |
ctttgctcttccagcctatgct |
33126271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 50747409 - 50747481
Alignment:
| Q |
26 |
ttattggatttttgggagcagctttgggaagtgttggaggtgtaggaggtggtggaatttttgtccctatgct |
98 |
Q |
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|||||||||||| |||||||| || |||||||||||||||||||| |||||||| || || || |||||||| |
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| T |
50747409 |
ttattggattttgtggagcagcgtttggaagtgttggaggtgtaggtggtggtggcatattcgttcctatgct |
50747481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 463
Target Start/End: Original strand, 50748443 - 50748539
Alignment:
| Q |
367 |
caggtatgattatgggtgcagcattatcaactgtttactacaatatgaggcttagaaacccaacactagacatgccacttatagattatgatttggc |
463 |
Q |
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| T |
50748443 |
caggtatgatcatgggtgcagctctgtcaactgtctactacaaccttaggctgagacatcctacattggacatgccaattattgactatgatttggc |
50748539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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