View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2783_high_2 (Length: 488)
Name: NF2783_high_2
Description: NF2783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2783_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 43927962 - 43928427
Alignment:
| Q |
18 |
catgcaagggtttaaatcattgaattaagttagaattgcatgttacaataacnnnnnnngacaatgaacaatatgaacaagttgttcatgattaattaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43927962 |
catgcaagggtttaaatcattgaattaagttagaattgcatgttacaataactttttttgacaatgaacaatatgaacaagttgttcatgattaattaaa |
43928061 |
T |
|
| Q |
118 |
aaacacatgcataaccaatgatgtaacaaaaataaataca-------taagcaaatcattaaatatatgttccaaattgccattttctgatattgggatt |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43928062 |
aaacacatgcataaccaatgatttaacaaaaataaatagacgaaagataagaaaatcattaaatatatgttccaaattgccattttctgatattgggatt |
43928161 |
T |
|
| Q |
211 |
ggatgcattgaatagaagacaatggattgaaagaaaataaatatatgagaagaaataccttaacaacaatgagcaccaaaccaagagagagatatgaagc |
310 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43928162 |
ggatgcat-gaatagaagacaatggattgaaagaaaataaatatatgagaagaaataccttaacaacaatgagcaccaaaccaagagagaaatatgaagc |
43928260 |
T |
|
| Q |
311 |
ggagataaaaaccagaaggaaatgtaaaacaagaacaaggattgaaatcaaaacatattaaagaaaagttatatnnnnnnntaaaaggatttttggtttt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43928261 |
ggagataaaaaccagaaggaaatgtaaaacaagaagaaggattgaaatcaaaacatattaaagaaaagttatat--aaaaataaaaggatttttggtttt |
43928358 |
T |
|
| Q |
411 |
gcagagttggaatggaacttcttcacaaaccaactaactgcgcgcaacctgcaacggtctgtgctcctc |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43928359 |
gcagagttggaatggaacttcttcacaaaccaactaactgcgcgcaacctgcaacggtctgtgatcctc |
43928427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University