View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2783_high_9 (Length: 250)
Name: NF2783_high_9
Description: NF2783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2783_high_9 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 12093087 - 12093330
Alignment:
| Q |
7 |
tccaagaatatagggaataagcagccataaaagatcaaccgtttggatttatacgcagtaaaatcatttgtaaaatgtctgtttaaatgtttgagaggta |
106 |
Q |
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| T |
12093087 |
tccaacaaaatagggaataaacaaccataaaagctcaaccgtttggatttatacgcagtaaaatcatttataaaatgtctgtttaaatgtttgtgaggta |
12093186 |
T |
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| Q |
107 |
ctgaaccggttcttttcttatatccatttgtaactacatatgcttgttaggattataattagttaataaccatgcaataaccaaatatgttgtcttcctt |
206 |
Q |
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| T |
12093187 |
ctgaaccggttcttttcttatatccatttgtaactacatatgcatgttaggaatataataagttaataaccatgcaataaccaaatatgttggcttcctt |
12093286 |
T |
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| Q |
207 |
tatccattatatatcttgacctctgcagacagaacagtcttttt |
250 |
Q |
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| T |
12093287 |
tatccattatatatcttgaacaatgcagacataacagtcttttt |
12093330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 26112610 - 26112367
Alignment:
| Q |
7 |
tccaagaatatagggaataagcagccataaaagatcaaccgtttggatttatacgcagtaaaatcatttgtaaaatgtctgtttaaatgtttgagaggta |
106 |
Q |
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| T |
26112610 |
tccaacaaaatagggaataaacagccataaaagctcaaccgtttggatttatacgcagtaaaatcatttataaaatatttgtttaaatgtttgagaggta |
26112511 |
T |
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| Q |
107 |
ctgaaccggttcttttcttatatccatttgtaactacatatgcttgttaggattataattagttaataaccatgcaataaccaaatatgttgtcttcctt |
206 |
Q |
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| T |
26112510 |
ttgaaccggttcttttcttatatacatttgtaactacatatgcatgttaggaatataataagttaataaccatgcaataaccaaatatgttggcttcctt |
26112411 |
T |
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| Q |
207 |
tatccattatatatcttgacctctgcagacagaacagtcttttt |
250 |
Q |
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| T |
26112410 |
tatccattatatatcttgaacaatgaagacagaacagtcttttt |
26112367 |
T |
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