View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2783_low_1 (Length: 541)
Name: NF2783_low_1
Description: NF2783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2783_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 366 - 527
Target Start/End: Original strand, 4002524 - 4002686
Alignment:
| Q |
366 |
cagcaatctgcacaatgcagtgataacagacaactatcaaactatcagatctaaattaaaccaagagttt-gtattcttcagattttatttcacaagtca |
464 |
Q |
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| T |
4002524 |
cagcaatctgcaaaatgcagtgataacagacaactatcaaactatcagatctaaattaaaccaagagttttgtattcttcagattttatttcacaagtca |
4002623 |
T |
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| Q |
465 |
taagttttatatattactcttatacgtgttaaataaattatatttgtgtatgatgtaatatct |
527 |
Q |
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| T |
4002624 |
taagttttatatattactcttatacgtgttaaataaattatatttgtgtatgatgtaatatct |
4002686 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 516
Target Start/End: Original strand, 9041527 - 9041585
Alignment:
| Q |
461 |
gtcataagttttatatattactcttatac---gtgttaaataaattatatttgtgtatg |
516 |
Q |
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| T |
9041527 |
gtcataagctttatatattactcttctacaatgtgtaaaatacattatatttgtgtatg |
9041585 |
T |
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