View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2783_low_11 (Length: 236)
Name: NF2783_low_11
Description: NF2783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2783_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12093507 - 12093727
Alignment:
| Q |
1 |
cattttaagaagaggtagtgttgtgannnnnnnatggtagccaaattatctgtcaaaggcaatagtaccagcatcttcagctggctgtcttcactctagc |
100 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12093507 |
cattttaagaagaggtagtgttgtgatttttttattgtagccaaattatttgtcaaaggcaattgtaccagcatcttcagctggctgtcttcactctagc |
12093606 |
T |
|
| Q |
101 |
cacattaaaaattttgtacatcaagtcctggcaaagaaatgaaagcaaccataaattagtcattatccattaatagtttcaaaactaaaatcatgagtat |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12093607 |
cacattaaaaattttgtacatcaagtcctgacaaagaaatgaaagcaaccatgaattagtcattatccattaatagtttcaaaattaaaatcatgagtat |
12093706 |
T |
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| Q |
201 |
gacaaccatatacctcatcac |
221 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
12093707 |
gacaaccacatacctcatcac |
12093727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26112190 - 26111970
Alignment:
| Q |
1 |
cattttaagaagaggtagtgttgtgannnnnnnatggtagccaaattatctgtcaaaggcaatagtaccagcatcttcagctggctgtcttcactctagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||||||||| |
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| T |
26112190 |
cattttaagaagaggtagtgttgtgatttttttatggtagccaaattatctctcaaaggcaattgtgccagcatcttcagctgtctgtcttcactctagc |
26112091 |
T |
|
| Q |
101 |
cacattaaaaattttgtacatcaagtcctggcaaagaaatgaaagcaaccataaattagtcattatccattaatagtttcaaaactaaaatcatgagtat |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26112090 |
cacattaaaaattttgtacatcaagttctggcaaagaaattaaagcaaccatgaattagtcattatccattaatagtttcaaaattaaaatcatgagtat |
26111991 |
T |
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| Q |
201 |
gacaaccatatacctcatcac |
221 |
Q |
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|||||||| |||||||||||| |
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| T |
26111990 |
gacaaccacatacctcatcac |
26111970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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