View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2783_low_2 (Length: 511)
Name: NF2783_low_2
Description: NF2783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2783_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 4621597 - 4621098
Alignment:
| Q |
1 |
aatttcttaaattcccgtgcatacaatagaaaacaaaataaaaatcaatacaagagtgcgcatacacaatatgcttctattcttttattcatttgaaatt |
100 |
Q |
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| T |
4621597 |
aatttcttaatttcccgtgcatacaatataaaccaaaataaaaatcaatacaagagtacgcatacgcaatatgcttctattcttttattcatttgaaatt |
4621498 |
T |
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| Q |
101 |
gtttgaaaacaatatttttgtaactaaatcaagatttttgattcatttagttacatgaagcaagttagtcactgcgggatgagtaatatgtctgcatgat |
200 |
Q |
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| T |
4621497 |
gtttgaaaacattattttggtaactaaatcaagatttttgattcatatagttacatgaagcaagttagtcactgcgggatgagtaatatgtctgcatgat |
4621398 |
T |
|
| Q |
201 |
ggtgagtaccaggagcatagcagctgctacaattcctatgaatttccacacatttggtatatggtcgcgtatcaaaatattataccagtttcgaacgtag |
300 |
Q |
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| T |
4621397 |
ggtgagtaccaggagcatagcagctgccacaattcctatgaatttccacacattaggtatatggtcgcgtatcaaaatattataccagtttcgaacgtag |
4621298 |
T |
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| Q |
301 |
tacataaggatctcaaaaactcgcctacattgatgccatgttctaataggtaatttttgcaccaccttggtgactttcattcccttgtagtcatacacat |
400 |
Q |
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| T |
4621297 |
tacataaggatctcaaaaactcgcctacattgatgccatgttctaataggtaatttttgcaccaccttggtgactttcattcccttgtagtcatacacat |
4621198 |
T |
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| Q |
401 |
tcatctttgcacaaatttcactaaaactcaaatccatatgttcagctccattcgaaattgtgcgaaatagtgccaacaaatcttcgttactcttgttcat |
500 |
Q |
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| T |
4621197 |
tcatcttcgcacaaatttcactaaaactcaaatccatatgttcagctccattcgaaattgtgcgaaatagtgccaacaaatcttcgttactcttgttcat |
4621098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 165 - 499
Target Start/End: Complemental strand, 4591901 - 4591567
Alignment:
| Q |
165 |
ttagtcactgcgggatgagtaatatgtctgcatgatggtgagtaccaggagcatagcagctgctacaattcctatgaatttccacacatttggtatatgg |
264 |
Q |
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|||| |||||||||||||||||||||| |||| |||||||| |||| ||||| ||||||||| |||||||||||||||||||| || | ||||||||| |
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| T |
4591901 |
ttagccactgcgggatgagtaatatgtttgcactatggtgagaaccacgagcaaagcagctgcgacaattcctatgaatttccaaaccgtaggtatatgg |
4591802 |
T |
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| Q |
265 |
tcgcgtatcaaaatattataccagtttcgaacgtagtacataaggatctcaaaaactcgcctacattgatgccatgttctaataggtaatttttgcacca |
364 |
Q |
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| T |
4591801 |
tcacgtatcaaaactttgtaccaatttcgcccatagttcacaaaattttcactaattcgcctacattgatgccaagcacgtataggcaattttcgcaaca |
4591702 |
T |
|
| Q |
365 |
ccttggtgactttcattcccttgtagtcatacacattcatctttgcacaaatttcactaaaactcaaatccatatgttcagctccattcgaaattgtgcg |
464 |
Q |
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| T |
4591701 |
cttttgtgactttcatccccatgtagtcatacacattcaaccttgcacaaatctcgctataactcaaatccatttgctcggctcctttggcaatcgtttg |
4591602 |
T |
|
| Q |
465 |
aaatagtgccaacaaatcttcgttactcttgttca |
499 |
Q |
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| T |
4591601 |
aaataatatcaacaaatcttcattgctcttgttca |
4591567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 373 - 448
Target Start/End: Complemental strand, 4555376 - 4555301
Alignment:
| Q |
373 |
actttcattcccttgtagtcatacacattcatctttgcacaaatttcactaaaactcaaatccatatgttcagctc |
448 |
Q |
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| T |
4555376 |
actttcatccccttgcagtcatacacattcaactttgtacaaatctcactataactcaaatccatgtgctcagctc |
4555301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 302
Target Start/End: Complemental strand, 4555578 - 4555447
Alignment:
| Q |
170 |
cactgcgggatgagtaatatgtctgcatgatggtgagtaccaggagcatagcagctgctacaattcctatgaatttccacacatttggtatatggtcgcg |
269 |
Q |
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| T |
4555578 |
cactacgggaggagcaatatgtttgcatgatagtaaggacgaggagcacaacaactgcgattattcctacgaatt-ccaaaccgtaggtatatgctcacg |
4555480 |
T |
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| Q |
270 |
tatcaaaatattataccagtttcgaacgtagta |
302 |
Q |
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| T |
4555479 |
tatcaaaatattgtaccagtttcgcccgtagta |
4555447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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