View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2783_low_4 (Length: 380)
Name: NF2783_low_4
Description: NF2783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2783_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 15 - 369
Target Start/End: Complemental strand, 45939751 - 45939388
Alignment:
| Q |
15 |
aaaagcaacatcatgtctattagagcctggataggcatgttgtgat---------ttgagaatgcttttgagttaatcacatctatgattgttttcatgc |
105 |
Q |
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| T |
45939751 |
aaaagcaacatcatgtctattagagcctgaataggcatgttgtgataacgaaatcttgagaatgcttttgagttaatcacgtctatgattgttttcatgc |
45939652 |
T |
|
| Q |
106 |
tttccacacacattctcaaatcttctggatctttgaagtaattgaaggtaactgatggattgtcattagggtttgttgttaggagttctaggtgacctgt |
205 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45939651 |
tttccacatacattctcaaatcttctggatctttgaagtaattgaaggtaactgatggattgtcattagggtttgttgttaggagttctaggtgacctgt |
45939552 |
T |
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| Q |
206 |
ggattttggtcccaaaatcttttcaagcatgacccctcctttgagaattggattggctaatgatctaattgtgtctgcaaaattttccatggcttctggt |
305 |
Q |
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| T |
45939551 |
ggattttggtcccaaaatcttttcaagcatgacccctcctttgagaattggattggctaatgatctaattgtgtctgcaaaaatttccatggcttctggt |
45939452 |
T |
|
| Q |
306 |
gtatacctgggagaatggtcactcttcacttcaaataataacaaaatttcatattcagattcat |
369 |
Q |
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| T |
45939451 |
gtaaacctgggagaatggtcactcttcacttcaaataataacaaaatttcatattcagattcat |
45939388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 45946845 - 45946540
Alignment:
| Q |
15 |
aaaagcaacatcatgtctattagagcctggataggcatgttgtgat---------ttgagaatgcttttgagttaatcacatctatgattgttttcatgc |
105 |
Q |
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||||||||||||| |||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45946845 |
aaaagcaacatcaagtctataagagcctggataggcatgtttttataacgaaatcttgagaatgcttttgagttaatcacatttatgattgttttcatgc |
45946746 |
T |
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| Q |
106 |
tttccacacacattctcaaatcttctggatctttgaagtaattgaaggtaactgatggattgtcattagggtttgttgttaggagttctaggtgacctgt |
205 |
Q |
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|||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||| ||||| || || |||||||| ||||| ||||||||||| |
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| T |
45946745 |
cttccacacacattctcaagtcttctggatccttgaaatagttgaaggtaactgatggattatcattgggattagttgttagaagttccaggtgacctgt |
45946646 |
T |
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| Q |
206 |
ggattttggtcccaaaatcttttcaagcatgacccctcc------tttgagaattggattggctaatgatctaattgtgtctgcaaaattttccatggct |
299 |
Q |
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|||| |||||||| | |||||||| || | ||||| ||||| ||||||||||| ||||||||||||| ||||||||||| ||||||| | | |
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| T |
45946645 |
ggatcgtggtcccattaccttttcaactatcattcctcctttgaatttgaaaattggattggttaatgatctaattatgtctgcaaaactttccatagtt |
45946546 |
T |
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| Q |
300 |
tctggt |
305 |
Q |
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|||||| |
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| T |
45946545 |
tctggt |
45946540 |
T |
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