View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2783_low_7 (Length: 285)
Name: NF2783_low_7
Description: NF2783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2783_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 266
Target Start/End: Original strand, 42534171 - 42534429
Alignment:
| Q |
8 |
tgataagaatacagaaacagacaatttgaaaagaaccttaagcttatctttgcgctgattgagcaactttgcagcccctaatagcatagtagcatgagca |
107 |
Q |
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| T |
42534171 |
tgataagaatacagaaacagacaatttgaaaagaaccttaagcttatctttgcgctgattgagcaactttgcagcccctaatagcatagtagcatgagca |
42534270 |
T |
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| Q |
108 |
tcatgtccacaagcatgcattctgccatcaattttgctcttgtattcccactcaacaagttcctaaccaagcatcaccaacatcagataaaaaatattac |
207 |
Q |
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| T |
42534271 |
tcatgtccacaagcatgcattctgccatcaattttgctcttgtattcccactcaacaagttcctaaccaagcatcaccaacatcagataaaaaatattac |
42534370 |
T |
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| Q |
208 |
cttatttgaaaaacaatattctcctcaaggagcataagaacagtgtatgtttggttcaa |
266 |
Q |
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| T |
42534371 |
cttatttgaaaaacaatattctcctcaaggagcataagaacagtgtatgtttggttcaa |
42534429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 42539020 - 42539204
Alignment:
| Q |
19 |
cagaaacagacaatttgaaaagaaccttaagcttatctttgcgctgattgagcaactttgcagcccctaatagcatagtagcatgagcatcatgtccaca |
118 |
Q |
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|||||||| | ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| |||||| |
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| T |
42539020 |
cagaaacaaataatttgaaaagaaccttaagcttatttttgcgccgattgagcaactttgcagccccaagtagcatagtagcatgagcatcatctccaca |
42539119 |
T |
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| Q |
119 |
agcatgcattctgccatcaattttgctcttgtattcccactcaac---aagttcctaaccaagcatcaccaacatcagataaaaa |
200 |
Q |
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| T |
42539120 |
agcatgcattctgccattaactttgctcttgaattctcactcatcactaagctcctaaccaagcatcaaagacatcagatcaaaa |
42539204 |
T |
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