View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2783_low_9 (Length: 256)
Name: NF2783_low_9
Description: NF2783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2783_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 4621798 - 4621570
Alignment:
| Q |
21 |
gtacaaactatattcaatgtaagaacgaggactaattagtaattatcatcgaattagaaagnnnnnnnntcactggagatgtgtttgttgtacttatgct |
120 |
Q |
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| T |
4621798 |
gtacaaactatattcaatgtaagaacgaggactaattagtaattatcatccaattagaaagaaaaaaaatctctggag-tgtgtttgttgtacttatgct |
4621700 |
T |
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| Q |
121 |
ttaaacatacagaaatgacacttggagatgtgttggttgaccttacacattaagcaataaaaaatattgatttacccnnnnnnnnnnnnngtttaccggt |
220 |
Q |
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| T |
4621699 |
ataaacatacagaaatgacacttggagatgtgttggttgaccttacacattaagcaatcaaaaatattgatttaccc-aaaaaaatataagtttactggt |
4621601 |
T |
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| Q |
221 |
tagaatttcttaatttcccgtgcatacaata |
251 |
Q |
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| T |
4621600 |
tggaatttcttaatttcccgtgcatacaata |
4621570 |
T |
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