View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2784-Insertion-10 (Length: 460)
Name: NF2784-Insertion-10
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2784-Insertion-10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 7 - 460
Target Start/End: Complemental strand, 48639862 - 48639405
Alignment:
| Q |
7 |
attaggaagtcagtccaagcctcaccttaccatttggaggttcaaagagtataattatggaacctggacaatggttggcatccaaacaagtcacaccaat |
106 |
Q |
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| T |
48639862 |
attaggaagtcagtccaagcctcaccttaccatttggaggttcaaagagtataattatggaacctggacaatggttggcatccaaacaagtcacaccaat |
48639763 |
T |
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| Q |
107 |
accagctatttcaaccttttggtttagaggcaaaatatgtagtttatcatatggaattcctatgttcatatttacaagtctggctgtaacagaggagcaa |
206 |
Q |
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| T |
48639762 |
accagctatttcaaccttttggtttagaggcaaaatatgtagtttatcatatggaattcctatgttcatatttactagtctggctgtaacagaggagcaa |
48639663 |
T |
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| Q |
207 |
tagatctttccatgattgaatgacttggtgagaccttgataatctgcattcacaaatgagagccaacagccaaagtacaaattggaaccctgattgtaat |
306 |
Q |
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| T |
48639662 |
tagatctttccatgattgaatgacttggtgagaccttgataatctgcattcaaaaatgagagccaacagccaaagtacaaattggaactctgattgtaat |
48639563 |
T |
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| Q |
307 |
aatctgctcataaggagctaaacacccgg----nnnnnnnnnnttattgatagttttaaatttagagtctccaatgagttttatcatgtgatggagacac |
402 |
Q |
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| T |
48639562 |
aatctgctcataaggagcttaacacctggaaaaagaaaaaaaaatattgatagttttaaatttagagtctccaatgagttttatcatgtgatggagacac |
48639463 |
T |
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| Q |
403 |
taaaattcatgggagactctgattgtaataattttcggatgcggattgtcatataaaa |
460 |
Q |
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| T |
48639462 |
taaaattcattggagactctgattgtaataattttcggatgtggattgtcatataaaa |
48639405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 6164285 - 6164604
Alignment:
| Q |
19 |
gtccaagcctcaccttaccatttggaggttcaaagagtataattatggaacctggacaatggttggcatccaaacaagtcacaccaataccagctatttc |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
6164285 |
gtccaagcctcaccttaccattcggaggttcaaagagtataagtatggaacctggacaatggttggcatccaaacaagtcacgctaataccagctatttc |
6164384 |
T |
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| Q |
119 |
aaccttttggtttagaggcaaaatatgtagtttatcatatggaattcctatgttcatatttacaagtctggctgtaacagaggagcaatagatctttcca |
218 |
Q |
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| T |
6164385 |
aatcttttggtttagaggcaaaatatgtaatttatcatatggaattcctatgttcatatttacaagtctggctgtaacagaggagcaatagatctttcca |
6164484 |
T |
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| Q |
219 |
tgattgaatgacttggtgagaccttgataatctgcat------tcacaaatgagagccaacagccaaagtacaaattggaaccctgattgtaataatctg |
312 |
Q |
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| T |
6164485 |
tgattgaatgacttggtgagaccttgataatctgcattcacaatcacaaatgagagccaacagccaaagtacaaattggaactcttattgtaataatctg |
6164584 |
T |
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| Q |
313 |
ctcataaggagctaaacacc |
332 |
Q |
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| T |
6164585 |
ctcataaggagctaaacacc |
6164604 |
T |
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