View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2784-Insertion-12 (Length: 363)
Name: NF2784-Insertion-12
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2784-Insertion-12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 363
Target Start/End: Complemental strand, 52716299 - 52715927
Alignment:
| Q |
8 |
accagaacattgatctggtgtgaagattttccaccaacgaactgaaccgtatgctaatatcatagcaacatatagcggcacaattgctgcgaaaacatcg |
107 |
Q |
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| T |
52716299 |
accagaacattgatctggtgtgaagattttccaccaacgaactgaaccgtatgctaatatcatagcaacatatagcggcacaattgctgcgaaaacatcg |
52716200 |
T |
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| Q |
108 |
tatatatccttaccggtaatcatggttatagataggtcaagatagattagatt-----------gaaattgttatagctagggtgacnnnnnnnnnngag |
196 |
Q |
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| T |
52716199 |
tatatatccttaccggtaatcatggttatagataggtcaaggtagattagattagacacacaaagaaattgttatagctagggtgacaaaaaaaagagag |
52716100 |
T |
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| Q |
197 |
agtttgtgtataaa-tttatttaagaaggaaacatggctg---agaaaggtttgattctgtattgttaagtcttctcttatagagggtgacac--ctatg |
290 |
Q |
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| T |
52716099 |
agtttgtgtataaattttatttaagaaggaaacatggctgagaagaaaggtttaattctgtattgttaagtcttctcttatagagggtgacacctctatg |
52716000 |
T |
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| Q |
291 |
tttataattaaatgagatttataaagtttataataaaaaatggaagttcaaatgtagacagaagagggttgga |
363 |
Q |
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| T |
52715999 |
tttataattaaatgagatttataaagtttataataaaaaatggaagttcaaatgtagacagaagagggttgga |
52715927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 52710990 - 52710841
Alignment:
| Q |
9 |
ccagaacattgatctggtgtgaagattttccaccaacgaactgaaccgtatgctaatatcatagcaacatatagcggcacaattgctgcgaaaacatcgt |
108 |
Q |
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| T |
52710990 |
ccagaacattgatctggtgtgaagattttccaccatcggaccgaaccatatgctaatatcatagcgacatatagtggcacaatcgccgctaaaacattgt |
52710891 |
T |
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| Q |
109 |
atatatccttaccggtaatcatggttatagataggtcaagatagattaga |
158 |
Q |
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| T |
52710890 |
atatgtccttgccggtaatcatggttatagatatgtcaaggtaggttaga |
52710841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 10839070 - 10839139
Alignment:
| Q |
12 |
gaacattgatctggtgtgaagattttccaccaacgaactgaaccgtatgctaatatcatagcaacatata |
81 |
Q |
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| T |
10839070 |
gaacattgatccggtgagaaaatcttccaccaacggaccgaaccgtaggctaagatcatagcaacatata |
10839139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 34970804 - 34970773
Alignment:
| Q |
12 |
gaacattgatctggtgtgaagattttccacca |
43 |
Q |
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| T |
34970804 |
gaacattgatctggtgtgaagattttccacca |
34970773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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