View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2784-Insertion-18 (Length: 111)

Name: NF2784-Insertion-18
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2784-Insertion-18
NF2784-Insertion-18
[»] chr1 (3 HSPs)
chr1 (8-111)||(32244183-32244286)
chr1 (8-111)||(32254712-32254815)
chr1 (8-111)||(32249892-32249995)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 2e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 32244286 - 32244183
Alignment:
Q  8 ccttcctcactcttctcttcttactataaatcaccactccacaggttcttctcttcaccaattcattcaccaaactcacaaacacaatgaggaagttctc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32244286 ccttcctcactcttctcttcttactataaatcaccactccacaggttcttctcttcaccaattcattcaccaaactcacaaacacaatgaggaagttctc 32244187  T
Q  108 tcta 111  Q
    ||||    
T  32244186 tcta 32244183  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-47
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 32254815 - 32254712
Alignment:
Q  8 ccttcctcactcttctcttcttactataaatcaccactccacaggttcttctcttcaccaattcattcaccaaactcacaaacacaatgaggaagttctc 107  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32254815 cctttctcacgcttctcttcttactataaatcaccactccacaggttcttctcttcaccaattcattcaccaaactcacaaacacaatgaggaagttctc 32254716  T
Q  108 tcta 111  Q
    ||||    
T  32254715 tcta 32254712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 3e-45
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 32249995 - 32249892
Alignment:
Q  8 ccttcctcactcttctcttcttactataaatcaccactccacaggttcttctcttcaccaattcattcaccaaactcacaaacacaatgaggaagttctc 107  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32249995 cctttctcacgcttctcttcttactataaatcaccactccacaggttcttctcttcaccaattcgttcaccaaactcacaaacacaatgaggaagttctc 32249896  T
Q  108 tcta 111  Q
    ||||    
T  32249895 tcta 32249892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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