View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2784-Insertion-2 (Length: 840)

Name: NF2784-Insertion-2
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2784-Insertion-2
NF2784-Insertion-2
[»] chr1 (5 HSPs)
chr1 (227-522)||(4662514-4662804)
chr1 (589-840)||(4662824-4663077)
chr1 (7-115)||(4662294-4662402)
chr1 (620-761)||(32025004-32025145)
chr1 (620-761)||(32025300-32025441)
[»] chr2 (9 HSPs)
chr2 (620-763)||(26533330-26533473)
chr2 (620-689)||(27187132-27187201)
chr2 (620-689)||(27836674-27836743)
chr2 (620-689)||(27836946-27837015)
chr2 (620-686)||(21088909-21088975)
chr2 (620-763)||(44279056-44279200)
chr2 (620-686)||(27187404-27187470)
chr2 (620-686)||(27837218-27837284)
chr2 (695-763)||(26533627-26533695)
[»] chr4 (4 HSPs)
chr4 (620-816)||(19987644-19987840)
chr4 (621-815)||(8107339-8107534)
chr4 (704-815)||(19987939-19988050)
chr4 (649-755)||(18936184-18936290)
[»] chr8 (8 HSPs)
chr8 (620-762)||(33446026-33446168)
chr8 (620-815)||(34373819-34374013)
chr8 (620-691)||(21403108-21403179)
chr8 (620-691)||(21797601-21797672)
chr8 (622-752)||(21008347-21008477)
chr8 (620-689)||(21396980-21397049)
chr8 (620-689)||(21791473-21791542)
chr8 (620-684)||(9410367-9410431)
[»] scaffold0007 (1 HSPs)
scaffold0007 (620-689)||(261950-262019)
[»] chr6 (1 HSPs)
chr6 (620-689)||(30045276-30045345)
[»] chr5 (6 HSPs)
chr5 (621-815)||(36975926-36976120)
chr5 (621-815)||(36975237-36975430)
chr5 (695-763)||(10567391-10567459)
chr5 (620-687)||(10321794-10321861)
chr5 (620-722)||(15226048-15226149)
chr5 (621-687)||(36975560-36975626)
[»] chr7 (4 HSPs)
chr7 (620-765)||(3958272-3958417)
chr7 (620-689)||(23071880-23071949)
chr7 (695-755)||(37223894-37223954)
chr7 (620-689)||(25194113-25194182)
[»] chr3 (2 HSPs)
chr3 (621-689)||(2706432-2706500)
chr3 (620-681)||(13843836-13843897)
[»] scaffold1212 (1 HSPs)
scaffold1212 (620-689)||(1898-1966)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 227 - 522
Target Start/End: Original strand, 4662514 - 4662804
Alignment:
Q  227 gtgcacatgtgacactcctcagaggggcaaaaaccaaaaataaggttatagggagtaaattttttatgttagtaatgtttttgatttattttacagcgag 326  Q
    |||||||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4662514 gtgcacatgtgacactc---agaggggcaaaaaccaaaaataagattatagggagtaaattttttatgttagta-tgtttttgatttattttacagcgag 4662609  T
Q  327 gattgaacttgccgaaattgcttagaggatcattgtttgaagagctttttagaatgactaaatcgaaaaatagcatatttattggcgtaaaaaacttata 426  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  4662610 gattgaacttgctgaaattgcttagaggatcattgtttgaagagctttttagaatgactaaataaaaaaatagcatatttattggcgtaaaaaacttata 4662709  T
Q  427 tgtatctaactgtttgattgccattttctaacacaatgccacaaaatcaatttgtgaagtgaggatcacccttcattaataaaaacttgttcatat 522  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4662710 tgtatctaattgtttgattgccattttctaacacaatg-cacaaaatcaatttgtgaagtgaggatcacctttcattaataaaaacttgttcatat 4662804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 589 - 840
Target Start/End: Original strand, 4662824 - 4663077
Alignment:
Q  589 cacatcaaacactttaatctacctgattaggagtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagc 688  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4662824 cacatcaaacactttaatatacctgattaggagtattcggtggaacaacttaatctagcctatatgcagcccttgcagtggtccaactctcaatgaaagc 4662923  T
Q  689 aacggatgttagaatttaagcccataaggagagcccaacgcagaagaccagttcattaagtgggagaacctcatgacc-gaaatacaacatcatgcagtt 787  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||| |||||| ||| ||    
T  4662924 aacagatgttaaaatttaagcccataaggagagcccaacgcagaagaccatttcattaagtgggagaacctcatgacctaaaataccacatcaagcactt 4663023  T
Q  788 caatctacctgatgtgggactcataacaacctcac-aactcatttatgatggat 840  Q
     ||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||    
T  4663024 taatctacttgatgtgagactcataacaatctcacaaactcatttatgatggat 4663077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 4662294 - 4662402
Alignment:
Q  7 atgtatattatgtgaaatctgttaaggatactacgaaaagaacgtgtatttatcatgaaaacttgtgattgcttgttttgttctcatgttgaggttatgt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4662294 atgtatattatgtgaaatctgttaaggatactacgaaaagaacgtgtattaatcatgaaaacttgtgattgcttgttttgttatcatgttgaggttatgt 4662393  T
Q  107 tacgttgct 115  Q
    |||||||||    
T  4662394 tacgttgct 4662402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 620 - 761
Target Start/End: Complemental strand, 32025145 - 32025004
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagcaacggatgttagaatttaagcccataaggag 719  Q
    |||||||||||||||| ||||||| |||||||| | ||||||||| |||||||||||||||||||||||| |   |||||| | |||||||||| |||||    
T  32025145 agtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatgaaagcaccaattgttaggacttaagcccatgaggag 32025046  T
Q  720 agcccaacgcagaagaccagttcattaagtgggagaacctca 761  Q
    |||||||| || || || ||| || || ||||||||||||||    
T  32025045 agcccaacccaaaaaactagtccaataggtgggagaacctca 32025004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 620 - 761
Target Start/End: Complemental strand, 32025441 - 32025300
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagcaacggatgttagaatttaagcccataaggag 719  Q
    |||||||||||||||| ||||||| |||||||| | ||||||||| |||||||||||||||||||||||| |   |||||| | |||||||||| |||||    
T  32025441 agtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatgaaagcaccaattgttaggacttaagcccatgaggag 32025342  T
Q  720 agcccaacgcagaagaccagttcattaagtgggagaacctca 761  Q
    |||||||| || || || ||| || || ||||||||||||||    
T  32025341 agcccaacccaaaaaactagtccaataggtgggagaacctca 32025300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 620 - 763
Target Start/End: Complemental strand, 26533473 - 26533330
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagcaacggatgttagaatttaagcccataaggag 719  Q
    |||||||||||||||| ||||||| |||||||| | |||||||||  ||||||||||||||||||||||| |   |||||| | |||||||||| |||||    
T  26533473 agtattcggtggaacaccttaatccagcctataggtagccctttccatggtccaactctcaatgaaagcaccaactgttaggacttaagcccatgaggag 26533374  T
Q  720 agcccaacgcagaagaccagttcattaagtgggagaacctcatg 763  Q
    |||||||| || ||||| ||| ||||| ||||||||||||||||    
T  26533373 agcccaacccaaaagactagtccattaggtgggagaacctcatg 26533330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 620 - 689
Target Start/End: Original strand, 27187132 - 27187201
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagca 689  Q
    |||||||||||||||| ||||||| |||||||| | ||||||||| ||||||||||||||||||||||||    
T  27187132 agtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatgaaagca 27187201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 620 - 689
Target Start/End: Original strand, 27836674 - 27836743
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagca 689  Q
    |||||||||||||||| ||||||| |||||||| | ||||||||| ||||||||||||||||||||||||    
T  27836674 agtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatgaaagca 27836743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 620 - 689
Target Start/End: Original strand, 27836946 - 27837015
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagca 689  Q
    |||||||||||||||| ||||||| |||||||| | ||||||||| ||||||||||||||||||||||||    
T  27836946 agtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatgaaagca 27837015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 620 - 686
Target Start/End: Complemental strand, 21088975 - 21088909
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaa 686  Q
    ||||||||||| |||| |||||||||| ||||| | ||||||||| ||| |||||||||||||||||    
T  21088975 agtattcggtgaaacaccttaatctagactataggtagccctttccgtgctccaactctcaatgaaa 21088909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 763
Target Start/End: Complemental strand, 44279200 - 44279056
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagcaacggatgttagaatttaagcccataaggag 719  Q
    |||||||||||||||| ||||||  | | |||| | | ||||||| |||||||||||||||||||||||| |   |||||| | |||| ||| | |||||    
T  44279200 agtattcggtggaacaccttaattcaacatataggtaaccctttccgtggtccaactctcaatgaaagcaccaattgttaggacttaaacccgtgaggag 44279101  T
Q  720 agcccaacgc-agaagaccagttcattaagtgggagaacctcatg 763  Q
    |||||||| | | ||||| | | || || ||||||||||||||||    
T  44279100 agcccaacccaaaaagactactccaataggtgggagaacctcatg 44279056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 686
Target Start/End: Original strand, 27187404 - 27187470
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaa 686  Q
    |||||||||||||||| ||||||  | |||||| | ||||||||| || ||||||||||||||||||    
T  27187404 agtattcggtggaacaccttaatacaacctataggtagccctttccgttgtccaactctcaatgaaa 27187470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 686
Target Start/End: Original strand, 27837218 - 27837284
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaa 686  Q
    |||||||||||||||| ||||||  | |||||| | ||||||||| || ||||||||||||||||||    
T  27837218 agtattcggtggaacaccttaatacaacctataggtagccctttccgttgtccaactctcaatgaaa 27837284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 695 - 763
Target Start/End: Complemental strand, 26533695 - 26533627
Alignment:
Q  695 tgttagaatttaagcccataaggagagcccaacgcagaagaccagttcattaagtgggagaacctcatg 763  Q
    |||||| | |||||||||| ||||||||||||| || ||||| ||| || || ||||||||||||||||    
T  26533695 tgttaggacttaagcccatgaggagagcccaacccaaaagactagtccaataggtgggagaacctcatg 26533627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 620 - 816
Target Start/End: Complemental strand, 19987840 - 19987644
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagcaacggatgttagaatttaagcccataaggag 719  Q
    |||||||||||||||| ||||||| |||||||| | ||||||||| |||||||||||||||||||||||| |   |||||| | ||||| |||| |||||    
T  19987840 agtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatgaaagcaccaattgttaggacttaagtccatgaggag 19987741  T
Q  720 agcccaacgcagaagaccagttcattaagtgggagaacctcatgaccgaaatacaacatcatgcagttcaatctacctgatgtgggactcataacaa 816  Q
    |||| ||| |||||||| ||| || || |||||||||||||||| |  || ||| ||||||  || ||  ||||||  |||||||||||| ||||||    
T  19987740 agcctaacccagaagactagtccaataggtgggagaacctcatggcttaagtaccacatcaaacattttgatctactcgatgtgggactcctaacaa 19987644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 621 - 815
Target Start/End: Original strand, 8107339 - 8107534
Alignment:
Q  621 gtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaa-tgaaagcaacggatgttagaatttaagcccataaggag 719  Q
    |||||||| ||| || ||||||| | ||||||   ||||||||| ||||||||||| |||| ||||||||||   |||||| | | ||||||||||||||    
T  8107339 gtattcggcggagcagcttaatccaacctatagatagccctttctgtggtccaactatcaaatgaaagcaacaattgttaggactgaagcccataaggag 8107438  T
Q  720 agcccaacgcagaagaccagttcattaagtgggagaacctcatgaccgaaatacaacatcatgcagttcaatctacctgatgtgggactcataaca 815  Q
    |||||||| || ||| | |||||| |   ||||||||||||||  |  || ||| |||||| ||| ||  ||||||  |||||||||||| |||||    
T  8107439 agcccaactcaaaaggctagttcaatggatgggagaacctcatagcttaagtaccacatcaagcactttgatctactcgatgtgggactcctaaca 8107534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 704 - 815
Target Start/End: Complemental strand, 19988050 - 19987939
Alignment:
Q  704 ttaagcccataaggagagcccaacgcagaagaccagttcattaagtgggagaacctcatgaccgaaatacaacatcatgcagttcaatctacctgatgtg 803  Q
    ||||| |||| ||||||||||||| |||||||| ||| || || |||||||||||||||| |  || ||| |||||| ||| ||  ||||||  ||||||    
T  19988050 ttaagtccatgaggagagcccaacccagaagactagtccaataggtgggagaacctcatggcttaagtaccacatcaagcattttgatctactcgatgtg 19987951  T
Q  804 ggactcataaca 815  Q
    |||||| |||||    
T  19987950 ggactcctaaca 19987939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 649 - 755
Target Start/End: Complemental strand, 18936290 - 18936184
Alignment:
Q  649 tatatgcagccctttcagtggtccaactctcaatgaaagcaacggatgttagaatttaagcccataaggagagcccaacgcagaagaccagttcattaag 748  Q
    |||||| ||||||||| ||| |||||||||||| || |||| |   | |||| | |||||||||| ||||||||||||| || ||||| | |  ||||||    
T  18936290 tatatgtagccctttccgtgatccaactctcaacgagagcatcaattcttaggacttaagcccatgaggagagcccaacccaaaagactattctattaag 18936191  T
Q  749 tgggaga 755  Q
    |||||||    
T  18936190 tgggaga 18936184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 620 - 762
Target Start/End: Complemental strand, 33446168 - 33446026
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagcaacggatgttagaatttaagcccataaggag 719  Q
    |||||| ||| || || ||||||| |||||||||| ||||||||  ||||||||||| ||||||||||||||   |||||  |||||||| |||  ||||    
T  33446168 agtatttggttgagcaccttaatccagcctatatgtagccctttacgtggtccaactttcaatgaaagcaacatttgttaagatttaagctcatgcggag 33446069  T
Q  720 agcccaacgcagaagaccagttcattaagtgggagaacctcat 762  Q
    ||||||||  | ||||| |||||||||||||| ||||||||||    
T  33446068 agcccaacctaaaagactagttcattaagtggaagaacctcat 33446026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 620 - 815
Target Start/End: Original strand, 34373819 - 34374013
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagcaacggatgttagaatttaagcccataaggag 719  Q
    |||||||| ||||||| ||||||| |||||| | | ||| ||||  |||||||||||||||||||||||| |   |||||| | ||||| |||| || ||    
T  34373819 agtattcgatggaacaccttaatccagcctacaggtagcactttacgtggtccaactctcaatgaaagcatcaattgttaggacttaag-ccatgagaag 34373917  T
Q  720 agcccaacgcagaagaccagttcattaagtgggagaacctcatgaccgaaatacaacatcatgcagttcaatctacctgatgtgggactcataaca 815  Q
    ||||||||||| ||||| ||| || || || ||||||||||| | |  || ||| |||||| ||| || |||||||  ||| || |||||||||||    
T  34373918 agcccaacgcaaaagactagtccaatatgtaggagaacctcacggcttaagtaccacatcaagcactttaatctactcgatatgagactcataaca 34374013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 620 - 691
Target Start/End: Complemental strand, 21403179 - 21403108
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagcaac 691  Q
    |||||| ||||||||| ||||||| |||||||| | ||| |||||  |||||||||||||||||||||||||    
T  21403179 agtatttggtggaacaccttaatccagcctataggtagctctttccatggtccaactctcaatgaaagcaac 21403108  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 620 - 691
Target Start/End: Complemental strand, 21797672 - 21797601
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagcaac 691  Q
    |||||| ||||||||| ||||||| |||||||| | ||| |||||  |||||||||||||||||||||||||    
T  21797672 agtatttggtggaacaccttaatccagcctataggtagctctttccatggtccaactctcaatgaaagcaac 21797601  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 622 - 752
Target Start/End: Original strand, 21008347 - 21008477
Alignment:
Q  622 tattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagcaacggatgttagaatttaagcccataaggagag 721  Q
    |||| ||||||||| ||||||| |||||||| | ||||||||| ||||||||| | |||| || |||| |   | |||| | |||| ||||| |||||||    
T  21008347 tatttggtggaacaccttaatccagcctataggtagccctttccgtggtccaaatttcaacgagagcaccaattattaggacttaaacccatgaggagag 21008446  T
Q  722 cccaacgcagaagaccagttcattaagtggg 752  Q
    |||||| || ||||| ||| ||||| |||||    
T  21008447 cccaacccaaaagacaagtccattaggtggg 21008477  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 689
Target Start/End: Original strand, 21396980 - 21397049
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagca 689  Q
    |||||||||||||||| ||||||| || | ||| | ||||||||| ||| || |||||||||||||||||    
T  21396980 agtattcggtggaacatcttaatccagacaatacgtagccctttccgtgatcaaactctcaatgaaagca 21397049  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 689
Target Start/End: Original strand, 21791473 - 21791542
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagca 689  Q
    |||||||||||||||| ||||||| || | ||| | ||||||||| ||| || |||||||||||||||||    
T  21791473 agtattcggtggaacatcttaatccagacaatacgtagccctttccgtgatcaaactctcaatgaaagca 21791542  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 684
Target Start/End: Complemental strand, 9410431 - 9410367
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatga 684  Q
    |||||| ||||||||| ||||||  |||||||| ||||| ||||| |||||| ||||||||||||    
T  9410431 agtatttggtggaacaccttaattcagcctataggcagctctttccgtggtctaactctcaatga 9410367  T

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Target: scaffold0007 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 620 - 689
Target Start/End: Complemental strand, 262019 - 261950
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagca 689  Q
    |||||||||||||||| ||||||| |||||||| | ||||||||| ||||||||||||||||||||||||    
T  262019 agtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatgaaagca 261950  T

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Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 620 - 689
Target Start/End: Complemental strand, 30045345 - 30045276
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagca 689  Q
    |||||||||||||||| ||||||| |||||||| | ||||||||| ||||||||||||||||||||||||    
T  30045345 agtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatgaaagca 30045276  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 621 - 815
Target Start/End: Complemental strand, 36976120 - 36975926
Alignment:
Q  621 gtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagcaacggatgttagaatttaagcccataaggaga 720  Q
    |||||| |||||||| ||||||| ||| |||| | || |||||   |||||||||| |||||||||||||    |||||| |||||||||||| ||||||    
T  36976120 gtattcagtggaacaccttaatccagcttataagtagtccttttcatggtccaactttcaatgaaagcaaaaattgttaggatttaagcccatgaggaga 36976021  T
Q  721 gcccaacgcagaagaccagttcattaagtgggagaacctcatgaccgaaatacaacatcatgcagttcaatctacctgatgtgggactcataaca 815  Q
    ||| ||| || ||||| ||| ||  | |||||||| ||| |||||  |||||| ||||||  || ||  ||||||  |||||||||||| |||||    
T  36976020 gcctaacccaaaagactagtccaacaggtgggagagccttatgacttaaataccacatcaaacactttgatctactcgatgtgggactcctaaca 36975926  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 815
Target Start/End: Complemental strand, 36975430 - 36975237
Alignment:
Q  621 gtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagcaacggatgttagaatttaagcccataaggaga 720  Q
    |||||| |||||||| ||||||||||  |||| | ||||||||| |||||||| || ||||| ||||||     |||| | ||| |||||||| | ||||    
T  36975430 gtattccgtggaacaccttaatctaggttataagtagccctttctgtggtccagctttcaatcaaagcacaaattgttgggatt-aagcccatgaagaga 36975332  T
Q  721 gcccaacgcagaagaccagttcattaagtgggagaacctcatgaccgaaatacaacatcatgcagttcaatctacctgatgtgggactcataaca 815  Q
    ||||||| || ||||| |||||| ||  ||||||| ||| |||||  |||||| ||||||  || || |||||||  |||||||||||| |||||    
T  36975331 gcccaacccaaaagactagttcaatagatgggagagccttatgacttaaatactacatcaaacactttaatctactcgatgtgggactcctaaca 36975237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 695 - 763
Target Start/End: Complemental strand, 10567459 - 10567391
Alignment:
Q  695 tgttagaatttaagcccataaggagagcccaacgcagaagaccagttcattaagtgggagaacctcatg 763  Q
    |||||| | |||||||||| ||||||||||||| || ||||| ||| || || ||||||||||||||||    
T  10567459 tgttaggacttaagcccatgaggagagcccaacccaaaagactagtgcaataggtgggagaacctcatg 10567391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 687
Target Start/End: Original strand, 10321794 - 10321861
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaag 687  Q
    |||| |||||||| ||  |||||| |||||||||| |||| |||| ||||||||||||||||| ||||    
T  10321794 agtaatcggtggagcactttaatccagcctatatgtagccatttctgtggtccaactctcaataaaag 10321861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 620 - 722
Target Start/End: Original strand, 15226048 - 15226149
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagcaacggatgttagaatttaagcccataaggag 719  Q
    ||||||||||| |||| ||||||| | |||||| | |||| |||| ||||||||||||||||| ||| || |   |||||| | |||||||||| |||||    
T  15226048 agtattcggtg-aacaccttaatccaacctataggtagccttttccgtggtccaactctcaattaaaacatcaattgttaggacttaagcccatgaggag 15226146  T
Q  720 agc 722  Q
    |||    
T  15226147 agc 15226149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 621 - 687
Target Start/End: Complemental strand, 36975626 - 36975560
Alignment:
Q  621 gtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaag 687  Q
    |||||| |||||||  ||||||| ||| |||| | ||||||||| ||||||||||| ||||||||||    
T  36975626 gtattcagtggaaccccttaatccagcttataagtagccctttccgtggtccaactttcaatgaaag 36975560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 620 - 765
Target Start/End: Original strand, 3958272 - 3958417
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagcaacggatgttagaatttaagcccataaggag 719  Q
    ||||||||||| |||| ||||||| | |||||| | ||||||||| |||||||||||||||| ||||||| |   |||||| | ||||| | || |||||    
T  3958272 agtattcggtgaaacaccttaatccaacctataagtagccctttccgtggtccaactctcaacgaaagcaccaattgttaggacttaagtcaatgaggag 3958371  T
Q  720 agcccaacgcagaagaccagttcattaagtgggagaacctcatgac 765  Q
    |||||||  || ||||| ||| |  ||  |||||||||||||||||    
T  3958372 agcccaatccaaaagactagtcctatagatgggagaacctcatgac 3958417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 689
Target Start/End: Complemental strand, 23071949 - 23071880
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagca 689  Q
    |||| ||||||||||| ||||||| | |||||| |  || ||||| ||||||||||||||||||||||||    
T  23071949 agtactcggtggaacaccttaatccaacctataggttgctctttctgtggtccaactctcaatgaaagca 23071880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 695 - 755
Target Start/End: Complemental strand, 37223954 - 37223894
Alignment:
Q  695 tgttagaatttaagcccataaggagagcccaacgcagaagaccagttcattaagtgggaga 755  Q
    |||||| | ||||||||||||||||||||||||||  ||||| ||| ||||| ||||||||    
T  37223954 tgttaggacttaagcccataaggagagcccaacgcctaagactagtccattaggtgggaga 37223894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 689
Target Start/End: Complemental strand, 25194182 - 25194113
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagca 689  Q
    ||||||||||||| ||  |||||| ||||||||   ||||||||| || ||||||||||||| |||||||    
T  25194182 agtattcggtggagcactttaatccagcctatagttagccctttctgtagtccaactctcaacgaaagca 25194113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 621 - 689
Target Start/End: Original strand, 2706432 - 2706500
Alignment:
Q  621 gtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagca 689  Q
    ||||||||||||||| ||||||| |||||||| | ||| ||||  ||||||||||||||||||||||||    
T  2706432 gtattcggtggaacatcttaatccagcctataagtagctctttttgtggtccaactctcaatgaaagca 2706500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 681
Target Start/End: Original strand, 13843836 - 13843897
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaa 681  Q
    |||||||| ||||||| ||||||| || ||||| | ||||||||| ||||||||||| ||||    
T  13843836 agtattcgatggaacaccttaatccagtctataggtagccctttcggtggtccaactttcaa 13843897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 689
Target Start/End: Complemental strand, 1966 - 1898
Alignment:
Q  620 agtattcggtggaacaacttaatctagcctatatgcagccctttcagtggtccaactctcaatgaaagca 689  Q
    |||||| ||||||||  |||| || |||||||| | |||||||||  |||||||||||||||||||||||    
T  1966 agtattgggtggaacttctta-tccagcctataggtagccctttccatggtccaactctcaatgaaagca 1898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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