View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2784-Insertion-3 (Length: 811)

Name: NF2784-Insertion-3
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2784-Insertion-3
NF2784-Insertion-3
[»] chr6 (10 HSPs)
chr6 (24-550)||(22879313-22879838)
chr6 (24-550)||(22897433-22897952)
chr6 (546-811)||(22879863-22880125)
chr6 (623-811)||(22898052-22898240)
chr6 (546-598)||(22897977-22898029)
chr6 (688-757)||(2921875-2921944)
chr6 (688-756)||(13556037-13556105)
chr6 (683-757)||(16403550-16403624)
chr6 (689-756)||(13558009-13558076)
chr6 (688-756)||(2923191-2923259)
[»] chr1 (10 HSPs)
chr1 (24-543)||(17229540-17230065)
chr1 (546-593)||(17230098-17230145)
chr1 (622-679)||(17230171-17230229)
chr1 (707-811)||(24284796-24284900)
chr1 (688-755)||(22827060-22827127)
chr1 (688-756)||(22826665-22826733)
chr1 (688-756)||(22840997-22841065)
chr1 (688-811)||(24272721-24272843)
chr1 (61-143)||(19145684-19145766)
chr1 (61-143)||(23673020-23673102)
[»] chr2 (5 HSPs)
chr2 (24-544)||(198185-198710)
chr2 (622-679)||(198799-198856)
chr2 (701-811)||(10128474-10128584)
chr2 (688-811)||(8761205-8761329)
chr2 (691-811)||(37965516-37965637)
[»] chr7 (12 HSPs)
chr7 (273-410)||(19537875-19538012)
chr7 (694-807)||(1716668-1716781)
chr7 (24-76)||(19537758-19537810)
chr7 (191-249)||(19537813-19537871)
chr7 (688-755)||(7961806-7961873)
chr7 (685-772)||(11269969-11270056)
chr7 (492-550)||(19538065-19538123)
chr7 (725-811)||(1103131-1103217)
chr7 (429-473)||(19538017-19538061)
chr7 (688-732)||(36207996-36208040)
chr7 (623-657)||(19538205-19538239)
chr7 (61-143)||(41552008-41552090)
[»] chr4 (7 HSPs)
chr4 (680-811)||(32015136-32015267)
chr4 (688-772)||(53469686-53469770)
chr4 (694-755)||(27272600-27272661)
chr4 (688-772)||(10395975-10396059)
chr4 (692-811)||(13816916-13817035)
chr4 (688-811)||(53472575-53472696)
chr4 (61-143)||(55045307-55045389)
[»] chr3 (4 HSPs)
chr3 (688-755)||(25889653-25889720)
chr3 (707-804)||(31141384-31141481)
chr3 (61-143)||(4270753-4270835)
chr3 (688-750)||(30046454-30046515)
[»] chr5 (3 HSPs)
chr5 (688-781)||(26896583-26896676)
chr5 (688-752)||(19670702-19670766)
chr5 (685-772)||(32795560-32795647)
[»] scaffold0031 (1 HSPs)
scaffold0031 (54-144)||(40870-40959)
[»] chr8 (1 HSPs)
chr8 (688-811)||(33897183-33897306)


Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 24 - 550
Target Start/End: Original strand, 22879313 - 22879838
Alignment:
Q  24 aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataatt 123  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879313 aacccaaaaggagacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataatt 22879412  T
Q  124 ctcacaaaatcaatatcataatatgattaattgctacaccatgaaattttaattcctttgaagttggtcacaaataatttcaaatcaacacaaattacca 223  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879413 ctcacaaaatcaatatcataatatgattaatttctacaccatgaaattctaattcctttgaagttggtcacaaataatttcaaatcaacacaaattacca 22879512  T
Q  224 tctcattagggtttaacaaatcatttnnnnnnnncattcaattttggagaaaaacattcaaaatgcagacagataaaccataaacacaaatcctagtcat 323  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879513 tctcattagggtttaacaaatcatttaaaaaaaa-attcaattttggagaaaaacattcaaaatgcagacagataaaccataaacacaaatcctagtcat 22879611  T
Q  324 aaaatgaaatgaaaatttgagattaacgtcgcctaagaatagagagattgtgggaagaaaacaattgctgattgtgaaccgacagtgattgtgagacaac 423  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879612 aaaataaaatgaaaatttgagattaacctcgcctaagaataaagagattgtgggaagaaaacaattgctgattgtgaaccgacagtgattgtgagacaac 22879711  T
Q  424 agttgtgtaacgaaaacggattggttggaagagatcgcagaagaggacaagcagtgggaggagatcgcgtgttggtagagagagacttctccagtgagga 523  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879712 agttgtgtaacgaaaacgggttggttggaagagatcgcagaagaggacaagcagtgggaggagatcgcgtgttggtagagagagacttctccagtgagga 22879811  T
Q  524 tagagagagatgaaagatatgatgttt 550  Q
    |||||||| ||||||||||||||||||    
T  22879812 tagagagaaatgaaagatatgatgttt 22879838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 24 - 550
Target Start/End: Original strand, 22897433 - 22897952
Alignment:
Q  24 aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataatt 123  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22897433 aacccaaaaggagacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataatt 22897532  T
Q  124 ctcacaaaatcaatatcataatatgattaattgctacaccatgaaattttaattcctttgaagttggtcacaaataatttcaaatcaacacaaattacca 223  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||         
T  22897533 ctcacaaaatcaatatcataatatgattaatttctacaccatgaaattctaattcctttgaagttgttcacaaataatttcaaatcaacacaaat----- 22897627  T
Q  224 tctcattagggtttaacaaatcatttnnnnnnnn-cattcaattttggagaaaaacattcaaaatgcagacagataaaccataaacacaaatcctagtca 322  Q
       ||||| |||||||||||||||||         ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  22897628 ---cattaaggtttaacaaatcatttaaaaaaaaacattcaattttggagaaaaacattcaagatgcagacatataaaccataaacacaaatcctagtca 22897724  T
Q  323 taaaatgaaatgaaaatttgagattaacgtcgcctaagaatagagagattgtgggaagaaaacaattgctgattgtgaaccgacagtgattgtgagacaa 422  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22897725 taaaataaaatgaaaatttgagattaacctcgcctaagaatagagagattgtgggaagaaaacaattgctgattgtgaaccgacagtgattgtgagacaa 22897824  T
Q  423 cagttgtgtaacgaaaacggattggttggaagagatcgcagaagaggacaagcagtgggaggagatcgcgtgttggtagagagagacttctccagtgagg 522  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22897825 cagttgtgtaacgaaaacgggttggtcggaagagatcgcagaagaggacaaacagtgggaggagatcgcgtgttggtagagagagacttctccagtgagg 22897924  T
Q  523 atagagagagatgaaagatatgatgttt 550  Q
    ||||||||| ||||||||||||||||||    
T  22897925 atagagagaaatgaaagatatgatgttt 22897952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 546 - 811
Target Start/End: Original strand, 22879863 - 22880125
Alignment:
Q  546 tgttttaattttatttttaatgttttataagctgctttccatgtcactaggccccnnnnnnnnnnnnnnnnnnnnngccaactcaagagtggtaggaggg 645  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |                     ||||||||||||||||||||||||    
T  22879863 tgttttaattttatttttaatgttttataagctgctttccatgtcactaggcctctttttttaattttttttt---gccaactcaagagtggtaggaggg 22879959  T
Q  646 tgtatcacctaaagggtgttcacgtatctttttcatatcagttatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttattt 745  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22879960 tgtatcacctaaagggtgttcacgtatctttttcatatcagttatagcaaaacccactaattattggtgcaagaaatattaacacacaaaacctttattt 22880059  T
Q  746 atatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacactaattc 811  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22880060 atatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacactaattc 22880125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 623 - 811
Target Start/End: Original strand, 22898052 - 22898240
Alignment:
Q  623 ccaactcaagagtggtaggagggtgtatcacctaaagggtgttcacgtatctttttcatatcagttatagcaaaacccactaattattgatgcaagaaat 722  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22898052 ccaactcaagagtggtaggagggtgtatcacctaaagggtgttcacgtatctttttcatatcagttatagcaaaacccactaattattggtgcaagaaat 22898151  T
Q  723 attaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacactaattc 811  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22898152 attaacacaaaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacactaattc 22898240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 546 - 598
Target Start/End: Original strand, 22897977 - 22898029
Alignment:
Q  546 tgttttaattttatttttaatgttttataagctgctttccatgtcactaggcc 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22897977 tgttttaattttatttttaatgttttataagctgctttccatgtcactaggcc 22898029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 757
Target Start/End: Original strand, 2921875 - 2921944
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagt 757  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||| || || ||||||||||| |||||||    
T  2921875 tatagcaaaacccactaactattggtgcaagaaatactaacacataagacttttatttatattaccaagt 2921944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 688 - 756
Target Start/End: Original strand, 13556037 - 13556105
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaag 756  Q
    |||||||||||||| ||| ||||| ||||||||||| ||||||||||  | ||||||||||||||||||    
T  13556037 tatagcaaaacccagtaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaag 13556105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 683 - 757
Target Start/End: Complemental strand, 16403624 - 16403550
Alignment:
Q  683 tcagttatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagt 757  Q
    |||| |||||||||| ||||||||||||| |||||  ||||| ||||||||| || |||||||||||||| ||||    
T  16403624 tcagctatagcaaaatccactaattattggtgcaaataatataaacacacaagacttttatttatatgactaagt 16403550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 756
Target Start/End: Original strand, 13558009 - 13558076
Alignment:
Q  689 atagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaag 756  Q
    ||||||||| ||||||| ||||| |||| |||||| ||||||||||  | ||||||||||||||||||    
T  13558009 atagcaaaatccactaactattggtgcatgaaatactaacacacaatgcttttatttatatgaccaag 13558076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 756
Target Start/End: Original strand, 2923191 - 2923259
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaag 756  Q
    |||| ||| ||||||||| ||||  |||||||| || |||||||||| || ||||||||||||||||||    
T  2923191 tataacaagacccactaactattagtgcaagaagtactaacacacaagacttttatttatatgaccaag 2923259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 24 - 543
Target Start/End: Original strand, 17229540 - 17230065
Alignment:
Q  24 aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataatt 123  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||| |||||||    
T  17229540 aacccaaaaggcaacaataagacaataatgtaacagaagattttaacaaaattatgagctaaacttctaattactattaggtttcaattaacccataatt 17229639  T
Q  124 ctcacaaaatcaatatcat-----aatatgattaattgctacaccatgaaattttaattcctttgaagttggtcacaaataatttcaaatcaacacaaat 218  Q
    |||||||||||| ||||||     ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17229640 ctcacaaaatcagtatcattccctaatatgattaatttctacaccatgaaattctaattcctttgaagttggtcacaaataatttcaaatcaacacaaat 17229739  T
Q  219 taccatctcattagggtttaacaaatcatttnnnnnnnncattcaattttggagaaaaacattcaaaatgcagacagataaaccataaacacaaatccta 318  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17229740 taccatctcattagggtttaacaaatcatttaaaaaaaacattcaattttggagaaaaacattcaaaatggagacagataaaccataaacacaaatccta 17229839  T
Q  319 gtcataaaatgaaatgaaaatttgagattaacgtcgcctaagaatagagagattgtgggaagaaaacaattgctgattgtgaaccgacagtgattgtgag 418  Q
     ||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  ||||||    
T  17229840 ttcataaagtaaaatgaaaatttgagattaacctcacctaagaatagagagattgtgggaagaaaacagttgttgattgtgaaccgacagtggctgtgag 17229939  T
Q  419 acaacagttg-tgtaacgaaaacggattggttggaagagatcgcagaagaggacaagcagtgggaggagatcgcgtgttggtagagagagacttctccag 517  Q
    |||||||||| |||||||||||||| | ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  17229940 acaacagttgttgtaacgaaaacgggtcggttggaagagatcgcataagaggacaagcggtgggaggagatcgcgtgttggtagagagagacttctccgg 17230039  T
Q  518 tgaggatagagagagatgaaagatat 543  Q
    ||||||||||| ||||||||||||||    
T  17230040 tgaggatagagggagatgaaagatat 17230065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 546 - 593
Target Start/End: Original strand, 17230098 - 17230145
Alignment:
Q  546 tgttttaattttatttttaatgttttataagctgctttccatgtcact 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17230098 tgttttaattttatttttaatgttttataagctgctttccatgtcact 17230145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 622 - 679
Target Start/End: Original strand, 17230171 - 17230229
Alignment:
Q  622 gccaactcaagagtggtaggagggtgtatca-cctaaagggtgttcacgtatctttttc 679  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  17230171 gccaactcaagagtggtaggagggtgtatcacccaaaagggtgttcacgtatctttttc 17230229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 707 - 811
Target Start/End: Complemental strand, 24284900 - 24284796
Alignment:
Q  707 tattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacact 806  Q
    ||||| ||||||||||||||||||||||  |||||||||||||  |||| |||||  |||||| ||  ||||||||| |||| |||||||| |||| | |    
T  24284900 tattggtgcaagaaatattaacacacaatgcctttatttatatagccaaatatttgcatatttgttcatattctctgatgtgggactttttcccaatatt 24284801  T
Q  807 aattc 811  Q
    |||||    
T  24284800 aattc 24284796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 688 - 755
Target Start/End: Original strand, 22827060 - 22827127
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaa 755  Q
    |||| ||||||||||||| ||||| |||||||||||| |||||||||  | |||||||||||||||||    
T  22827060 tataacaaaacccactaactattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaa 22827127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 756
Target Start/End: Original strand, 22826665 - 22826733
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaag 756  Q
    |||||||||| ||||||| ||||| ||||||||||| ||||||| ||  | ||||||||||||||||||    
T  22826665 tatagcaaaatccactaactattggtgcaagaaatactaacacataaggcttttatttatatgaccaag 22826733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 756
Target Start/End: Complemental strand, 22841065 - 22840997
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaag 756  Q
    ||||| |||||||||||| ||||| ||||||||||| ||||||||||  | ||||||| ||||||||||    
T  22841065 tatagtaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttttatgaccaag 22840997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 811
Target Start/End: Complemental strand, 24272843 - 24272721
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgt 787  Q
    ||||| ||||| |||||| ||||| ||||||||||| ||||||||||  ||||||| |||||   ||||| |||  |||||||||  || |||  | |||    
T  24272843 tatagtaaaactcactaactattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcatactctacgatgt 24272744  T
Q  788 gtgacttttttccaacactaattc 811  Q
    | || |||||||||||||||||||    
T  24272743 gaga-ttttttccaacactaattc 24272721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 19145766 - 19145684
Alignment:
Q  61 agattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataattctcacaaaatcaatatcata 143  Q
    ||||||||||  |||||||| |||||| |||||||||||||| ||||   ||||| || |||| |||| |||||| |||||||    
T  19145766 agattttaacttaattatgaactaaacatctaaatactatcaagctttgtttaacccaaaattatcactaaatcagtatcata 19145684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 23673102 - 23673020
Alignment:
Q  61 agattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataattctcacaaaatcaatatcata 143  Q
    ||||||||||  |||||||| |||||| |||||||||||||| ||||   ||||| || |||| |||| |||||| |||||||    
T  23673102 agattttaacttaattatgaactaaacatctaaatactatcaagctttgtttaacccaaaattatcactaaatcagtatcata 23673020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 24 - 544
Target Start/End: Original strand, 198185 - 198710
Alignment:
Q  24 aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataatt 123  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  198185 aacccaaaaggcaacaataagacagtaatgtaatagaagattttaacaaaattatgacctaaacttctaaatactatcaggtttcaattaacccataatt 198284  T
Q  124 ctcacaaaatcaatatca-----taatatgattaattgctacaccatgaaattttaattcctttgaagttggtcacaaataatttcaaatcaacacaaat 218  Q
    |||||||||||| |||||     |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  198285 ctcacaaaatcagtatcataccctaatatgattaatttctacaccatgaaattctaattcctttgaagttggtcacaaataatttcaaatcaacacaaat 198384  T
Q  219 taccatctcattagggtttaacaaatcattt-nnnnnnnncattcaattttggagaaaaacattcaaaatgcagacagataaaccataaacacaaatcct 317  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  198385 taccatctcattagggtttaacaaatcatttaaaaaaaaacattcaattttggagaaaaacattcaaaatgcagacagataaaccataagcacaaatcct 198484  T
Q  318 agtcataaaatgaaatgaaaatttgagattaacgtcgcctaagaatagagagattgtgggaagaaaacaattgctgattgtgaaccgacagtgattgtga 417  Q
    | ||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||| |||| ||  |||||    
T  198485 attcataaagtaaaatgaaaatttgagattaacctcacctaagaatagagagattgtgggaagaaaacagttgttgattgtgaactgacaatggctgtga 198584  T
Q  418 gacaacagttg-tgtaacgaaaacggattggttggaagagatcgcagaagaggacaagcagtgggaggagatcgcgtgttggtagagagagacttctcca 516  Q
    ||||||| ||| |||||||||||||| | |||||||||||||| || |||||||||||| |||||||||||||||| ||||  | ||||||||||||||     
T  198585 gacaacaattgttgtaacgaaaacgggtcggttggaagagatcacataagaggacaagcggtgggaggagatcgcgcgttg--atagagagacttctccg 198682  T
Q  517 gtgaggatagagagagatgaaagatatg 544  Q
     ||||||||||| |||||||||||||||    
T  198683 atgaggatagagggagatgaaagatatg 198710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 622 - 679
Target Start/End: Original strand, 198799 - 198856
Alignment:
Q  622 gccaactcaagagtggtaggagggtgtatcacctaaagggtgttcacgtatctttttc 679  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  198799 gccaactcaagaatggtaggagggtgtatcacccaaagggtgttcacgtatctttttc 198856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 701 - 811
Target Start/End: Complemental strand, 10128584 - 10128474
Alignment:
Q  701 actaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttcc 800  Q
    ||||| ||||| ||||||||||| |||||||||| || ||||||||||||||||||| |||  |||||||||  ||||||| | ||||  |  |||||||    
T  10128584 actaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtggaatatttttcc 10128485  T
Q  801 aacactaattc 811  Q
    |||||||||||    
T  10128484 aacactaattc 10128474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 688 - 811
Target Start/End: Original strand, 8761205 - 8761329
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgacc-aagtatttatatatttctttctattctctgttg 786  Q
    |||| ||||| |||||||  |||| ||||||||||| |||||||||| || ||||||||||||||| ||||||||  |||||||||  |||| |||| ||    
T  8761205 tataacaaaatccactaacaattggtgcaagaaatactaacacacaagacttttatttatatgaccaaagtatttgcatatttcttcatattatctgatg 8761304  T
Q  787 tgtgacttttttccaacactaattc 811  Q
    || ||| |||| ||||||| |||||    
T  8761305 tgggacattttcccaacacaaattc 8761329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 691 - 811
Target Start/End: Original strand, 37965516 - 37965637
Alignment:
Q  691 agcaaaacccactaattattgatgcaagaaatattaacacacaaa-acctttatttatatgaccaagtatttatatatttctttctattctctgttgtgt 789  Q
    ||||||||||| ||| ||||| ||||||||||| ||||||||||| || |||||||||||  |||||| |||  |||||||||  |||| || | ||||     
T  37965516 agcaaaacccattaactattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatattatccgatgtga 37965615  T
Q  790 gacttttttccaacactaattc 811  Q
    ||| |||| |||||||||||||    
T  37965616 gacattttcccaacactaattc 37965637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 5e-55; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 273 - 410
Target Start/End: Original strand, 19537875 - 19538012
Alignment:
Q  273 aaaaacattcaaaatgcagacagataaaccataaacacaaatcctagtcataaaatgaaatgaaaatttgagattaacgtcgcctaagaatagagagatt 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || ||||||||| ||||||||    
T  19537875 aaaaacattcaaaatgcagacagataaaccataaacacaaatcctagtcataaaataaaatgaaaattcgagattaacctcacctaagaatggagagatt 19537974  T
Q  373 gtgggaagaaaacaattgctgattgtgaaccgacagtg 410  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  19537975 gtgggaagaaaacagttgttgattgtgaaccgacagtg 19538012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 694 - 807
Target Start/End: Original strand, 1716668 - 1716781
Alignment:
Q  694 aaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgact 793  Q
    ||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||  ||||| |||| |||||| ||  ||||||  | |||| || |    
T  1716668 aaaactcactaactattgatgcaagaaatattaacacacaagacctttatttatatggtcaagtctttacatattttttcatattcttcgatgtgagaat 1716767  T
Q  794 tttttccaacacta 807  Q
    ||||||||||||||    
T  1716768 tttttccaacacta 1716781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 19537758 - 19537810
Alignment:
Q  24 aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaatt 76  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19537758 aacccaaaaggcaacaataagacagtaatgtaacagaagattttaacaaaatt 19537810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 19537813 - 19537871
Alignment:
Q  191 tcacaaataatttcaaatcaacacaaattaccatctcattagggtttaacaaatcattt 249  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||    
T  19537813 tcacaaataatttgaaatcagcacaaatgaccatctcattagggtttaacaaatcattt 19537871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 688 - 755
Target Start/End: Complemental strand, 7961873 - 7961806
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaa 755  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||||  | |||||||||||||||||    
T  7961873 tatagcaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaa 7961806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 685 - 772
Target Start/End: Complemental strand, 11270056 - 11269969
Alignment:
Q  685 agttatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctt 772  Q
    ||||||||||||||||||||| ||||| |||||  |||| ||||||||||  | |||||||||||||||||   ||| ||||||||||    
T  11270056 agttatagcaaaacccactaactattggtgcaactaatactaacacacaaggcttttatttatatgaccaaacttttttatatttctt 11269969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 550
Target Start/End: Original strand, 19538065 - 19538123
Alignment:
Q  492 gtgttggtagagagagacttctccagtgaggatagagagagatgaaagatatgatgttt 550  Q
    |||||||||||||||||||| ||  ||||||||||| |||||||||||||||| |||||    
T  19538065 gtgttggtagagagagacttatctggtgaggatagatagagatgaaagatatgttgttt 19538123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 725 - 811
Target Start/End: Complemental strand, 1103217 - 1103131
Alignment:
Q  725 taacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacactaattc 811  Q
    ||||||||||  | |||||||||||| |||||| |||| |||||||||  |||| || | |||| ||| ||||||||||||||||||    
T  1103217 taacacacaaggcttttatttatatggccaagtctttacatatttcttcatattatccgatgtgggacgtttttccaacactaattc 1103131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 429 - 473
Target Start/End: Original strand, 19538017 - 19538061
Alignment:
Q  429 tgtaacgaaaacggattggttggaagagatcgcagaagaggacaa 473  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||||    
T  19538017 tgtaactaaaacgggttggtcggaagagatcgcagaagaggacaa 19538061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 732
Target Start/End: Complemental strand, 36208040 - 36207996
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacac 732  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||    
T  36208040 tatagcaaaacccactaactattggtgcaagaaatactaacacac 36207996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 623 - 657
Target Start/End: Original strand, 19538205 - 19538239
Alignment:
Q  623 ccaactcaagagtggtaggagggtgtatcacctaa 657  Q
    ||||||||||| |||||||||||||||||||||||    
T  19538205 ccaactcaagattggtaggagggtgtatcacctaa 19538239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 41552008 - 41552090
Alignment:
Q  61 agattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataattctcacaaaatcaatatcata 143  Q
    ||||||||||  |||||||| |||||| |||||||||||||| ||||   ||||| || |||| |||| |||||| |||||||    
T  41552008 agattttaacttaattatgaactaaacatctaaatactatcaagctttgtttaacccaaaattatcactaaatcagtatcata 41552090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 680 - 811
Target Start/End: Complemental strand, 32015267 - 32015136
Alignment:
Q  680 atatcagttatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattc 779  Q
    ||||||| |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |  |||||| |||  |||| |||| |||||     
T  32015267 atatcagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctatta 32015168  T
Q  780 tctgttgtgtgacttttttccaacactaattc 811  Q
    | |  |||| ||||||||| ||||||||||||    
T  32015167 ttttatgtgagacttttttacaacactaattc 32015136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 688 - 772
Target Start/End: Original strand, 53469686 - 53469770
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctt 772  Q
    ||||| |||| ||||||| ||||||| ||||||||| |||||||||| || ||||||||||||||||||| |||  |||||||||    
T  53469686 tatagtaaaatccactaactattgattcaagaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttctt 53469770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 27272661 - 27272600
Alignment:
Q  694 aaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaa 755  Q
    |||||||||||| ||||| ||||||||||| |||||||||| || |||||||||||||||||    
T  27272661 aaaacccactaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaa 27272600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 688 - 772
Target Start/End: Complemental strand, 10396059 - 10395975
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctt 772  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||||||  | |||||||||||| || ||| |||  |||||||||    
T  10396059 tatagcataacccactaactattgatgcaagaaatactaacacacaaggcttttatttatatggccgagtctttgcatatttctt 10395975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 811
Target Start/End: Complemental strand, 13817035 - 13816916
Alignment:
Q  692 gcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtga 791  Q
    ||||||| |||||| ||||  | ||||||||| ||||||| ||   |||||||||||||||||||| ||   |||||||||  ||||||  | |||| ||    
T  13817035 gcaaaactcactaactatttgtacaagaaataataacacataaggtctttatttatatgaccaagtcttcgcatatttcttcatattcttcgatgtgaga 13816936  T
Q  792 cttttttccaacactaattc 811  Q
    |||||| |||||| ||||||    
T  13816935 ctttttcccaacattaattc 13816916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 811
Target Start/End: Original strand, 53472575 - 53472696
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgt 787  Q
    ||||||||||||||||||  |||| |||| |||||| |||||||| |||| ||||||||||||  ||||| |||  |||||||||  |||| || | |||    
T  53472575 tatagcaaaacccactaaccattggtgcatgaaatactaacacac-aaacttttatttatatg-gcaagtctttgcatatttcttcgtattatccgatgt 53472672  T
Q  788 gtgacttttttccaacactaattc 811  Q
    |  || |||| |||||||||||||    
T  53472673 ggaacattttcccaacactaattc 53472696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 55045307 - 55045389
Alignment:
Q  61 agattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataattctcacaaaatcaatatcata 143  Q
    ||||||||||  |||||||| |||||| |||||||||||||| ||||   ||||| || |||| |||| |||||| |||||||    
T  55045307 agattttaacttaattatgaactaaacatctaaatactatcaagctttgtttaacccaaaattatcactaaatcagtatcata 55045389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 688 - 755
Target Start/End: Complemental strand, 25889720 - 25889653
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaa 755  Q
    |||||||||||||||||| ||||| ||||||||||| ||||| |||| || |||||||||||||||||    
T  25889720 tatagcaaaacccactaactattggtgcaagaaatactaacatacaagacttttatttatatgaccaa 25889653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 707 - 804
Target Start/End: Complemental strand, 31141481 - 31141384
Alignment:
Q  707 tattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaaca 804  Q
    ||||| || |||||||| |||||| ||| || |||||||||||| | || | |||  ||||||||| |||||||||| |||| |||||||||| ||||    
T  31141481 tattggtgtaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctattctctgatgtgagacttttttctaaca 31141384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 4270753 - 4270835
Alignment:
Q  61 agattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataattctcacaaaatcaatatcata 143  Q
    ||||||||||  |||||||| |||||| |||||||||||||| ||||   ||||| || |||| |||| |||||| |||||||    
T  4270753 agattttaacttaattatgaactaaacatctaaatactatcaagctttgtttaacccaaaattatcactaaatcagtatcata 4270835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 750
Target Start/End: Complemental strand, 30046515 - 30046454
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatg 750  Q
    |||||||||||| ||||| ||||| | ||||||||| ||||||||||| | ||||||||||||    
T  30046515 tatagcaaaaccgactaactattg-tacaagaaatactaacacacaaagcttttatttatatg 30046454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 781
Target Start/End: Complemental strand, 26896676 - 26896583
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctc 781  Q
    ||||||||||| || ||| |||| |||||||||||| ||||||||||   ||||||||||||| |||||| |||  ||||||||| ||||||||    
T  26896676 tatagcaaaacacattaactattaatgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctattctc 26896583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 752
Target Start/End: Complemental strand, 19670766 - 19670702
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgac 752  Q
    |||||||||||||||||| ||||| | |||| |||| ||||||||||  | ||||||||||||||    
T  19670766 tatagcaaaacccactaactattggtacaagtaatactaacacacaaggcttttatttatatgac 19670702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 772
Target Start/End: Original strand, 32795560 - 32795647
Alignment:
Q  685 agttatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctt 772  Q
    ||||||||||||||||||||| ||||| | |||| |||| | |||| ||| || |||||| ||||||| |||| |||  |||||||||    
T  32795560 agttatagcaaaacccactaactattggtacaagtaatactgacacgcaagacttttattaatatgactaagtctttgcatatttctt 32795647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 40870 - 40959
Alignment:
Q  54 taacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataattctcacaaaatcaatatcataa 144  Q
    |||||||| ||||||| | ||||||||  ||||||| |||||||||||| | |||| |||||||| | ||||||| |||||| ||||||||    
T  40870 taacagaa-attttaagataattatgaagtaaacttttaaatactatcaagtttcatttaactcaaagttctcactaaatcagtatcataa 40959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 811
Target Start/End: Complemental strand, 33897306 - 33897183
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgt 787  Q
    |||| ||||||| ||||||||||| || || ||||| |||||||||| || |||||||||||   ||| | |||| ||||||||| ||||| | || | |    
T  33897306 tataacaaaacctactaattattggtgtaaaaaatactaacacacaagacttttatttatattgtcaaatctttacatatttcttcctattatatgatat 33897207  T
Q  788 gtgacttttttccaacactaattc 811  Q
      ||| |||| |||||||||||||    
T  33897206 tggacattttcccaacactaattc 33897183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University