View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2784-Insertion-4 (Length: 778)
Name: NF2784-Insertion-4
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2784-Insertion-4 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 755; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 8 - 778
Target Start/End: Complemental strand, 14242236 - 14241466
Alignment:
| Q |
8 |
tgacactgttactcctttttcaaatgctggattttggagtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14242236 |
tgacactgttactcctttttcaaatgctggaatttggagtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagac |
14242137 |
T |
|
| Q |
108 |
cttgaggatgttcctcagctagatagtagagatagtgtggttggagcttttcctattttcagagacaaacttgaagctgattgtggtgcaatcaatagag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14242136 |
cttgaggatgttcctcagctagatagtagagatagtgtggttggagcttttcctattttcagagacaaacttgaagctgattgtggtgcaatcaatagag |
14242037 |
T |
|
| Q |
208 |
taaccacacttaagttggttaagtcattgataatctccgggtggaaagaaattcttatcactgcttttcttgcattggtaaacactttttctacttatgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14242036 |
taaccacacttaagttggttaagtcattgataatctcagggtggaaagaaattcttatcactgcttttcttgcattggtaaacactttttctacttatgt |
14241937 |
T |
|
| Q |
308 |
tggtccttatcttattgattcttttgttcaatacattgacggaaaaaggttatatgagaatcaaggctatgtgttggtttcttcctttttatttgcaaag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14241936 |
tggtccttatcttattgattcttttgttcaatacattgacggaaaaaggttatatgagaatcaaggctatgtgttggtttcttcctttttatttgcaaag |
14241837 |
T |
|
| Q |
408 |
cttgtagagtgcttaacagaaagacatttgtactttaggttgcagcaactaggacttcgaatccgtgcactgcttgtgacgatcatatataataaagcct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14241836 |
cttgtagagtgcttaacagaaagacatttgtactttaggttgcagcaactaggacttcgaatccgtgcactgcttgtgacgatcatatataataaagcct |
14241737 |
T |
|
| Q |
508 |
taacactttcatgtcaatcaaagcagtgtcacagttctggagaaattatcaatttcataactgttgatgccgaaagagttggtacttttggctggtacat |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14241736 |
taacactttcatgtcaatcaaagcagtgtcacagttctggagaaattatcaatttcataactgttgatgccgaaagagttggtacttttggttggtacat |
14241637 |
T |
|
| Q |
608 |
gcatgatttgtggttactggctttgaaagttacattggcattgttaattttgtataagaacattggactcgcttcaattgctacttttgtttcaaccgtt |
707 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14241636 |
gcatgatttgtggttactagctttgaaagttacattggcattgttaattttgtataagaacattggactcgcttcaattgctacttttgtttcaaccgtt |
14241537 |
T |
|
| Q |
708 |
gtggttatgttggcaaatgttccattgggatcattgcaagagaagtttcaagataagttgatggagtcaaa |
778 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14241536 |
gtggttatgttggcaaatgttccattgggatcattgcaagagaagtttcaagataagttgatggagtcaaa |
14241466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 8 - 778
Target Start/End: Original strand, 14371085 - 14371855
Alignment:
| Q |
8 |
tgacactgttactcctttttcaaatgctggattttggagtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagac |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14371085 |
tgacactgttgctcctttttcaaatgctggattttggagtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagac |
14371184 |
T |
|
| Q |
108 |
cttgaggatgttcctcagctagatagtagagatagtgtggttggagcttttcctattttcagagacaaacttgaagctgattgtggtgcaatcaatagag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14371185 |
cttgaggatgttcctcagctagatagtagagatagtgtggttggagcttttcctattttcagagacaaacttgaagctgattgtggtgcaatcaatagag |
14371284 |
T |
|
| Q |
208 |
taaccacacttaagttggttaagtcattgataatctccgggtggaaagaaattcttatcactgcttttcttgcattggtaaacactttttctacttatgt |
307 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| ||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14371285 |
taaccacacttaaattggttaagtctttgataatctcagggaaaaaagagatttttatcactgcttctcttgcattggtaaacactttttctacttatgt |
14371384 |
T |
|
| Q |
308 |
tggtccttatcttattgattcttttgttcaatacattgacggaaaaaggttatatgagaatcaaggctatgtgttggtttcttcctttttatttgcaaag |
407 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14371385 |
tggcccttatcttattgattcttttgttcaataccttgatggaaaaaggctatatgagaatcaaggctatgtgttggtttcttcctttttctttgcaaag |
14371484 |
T |
|
| Q |
408 |
cttgtagagtgcttaacagaaagacatttgtactttaggttgcagcaactaggacttcgaatccgtgcactgcttgtgacgatcatatataataaagcct |
507 |
Q |
| |
|
|||||||| |||||||| | || || || |||||||||||||||||| ||||||||||||| |||||||||||||| | |||||||| ||||||| |
|
|
| T |
14371485 |
cttgtagaaagcttaacaaacaggcagcagttctttaggttgcagcaactcggacttcgaatccaagcactgcttgtgacattgatatataacaaagcct |
14371584 |
T |
|
| Q |
508 |
taacactttcatgtcaatcaaagcagtgtcacagttctggagaaattatcaatttcataactgttgatgccgaaagagttggtacttttggctggtacat |
607 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| |||||||||||| ||||||||||| || |||||||| |||| |||||||| ||| | ||||| || |
|
|
| T |
14371585 |
taacactttcatctcaatcaaggcagtgtcacacttctggagaaataatcaatttcatgaccgttgatgctgaaacagttggtagtttcagttggtatat |
14371684 |
T |
|
| Q |
608 |
gcatgatttgtggttactggctttgaaagttacattggcattgttaattttgtataagaacattggactcgcttcaattgctacttttgtttcaaccgtt |
707 |
Q |
| |
|
||||||||||||| || | |||||| ||||||||||||||||||| ||||||||||| ||| ||||||| |||||| ||||| |||||||| ||||| | |
|
|
| T |
14371685 |
gcatgatttgtggatagtagctttgcaagttacattggcattgttgattttgtataaaaaccttggacttgcttcagttgctgcttttgttacaaccatc |
14371784 |
T |
|
| Q |
708 |
gtggttatgttggcaaatgttccattgggatcattgcaagagaagtttcaagataagttgatggagtcaaa |
778 |
Q |
| |
|
| ||||||||||||| | ||||| ||||||||| ||||||||||| || ||||||||||||||||||| |
|
|
| T |
14371785 |
attgttatgttggcaactcttccaacgggatcattccaagagaagttacataataagttgatggagtcaaa |
14371855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 8 - 778
Target Start/End: Complemental strand, 41453251 - 41452481
Alignment:
| Q |
8 |
tgacactgttactcctttttcaaatgctggattttggagtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagac |
107 |
Q |
| |
|
|||||||||||| |||||||| | ||||||| ||| |||||||||||| |||||||||||| | ||||||||||||||||| ||||||| | |||||| |
|
|
| T |
41453251 |
tgacactgttacccctttttctactgctggaattttgagtcttctcactttcacttgggtgggaccacttatagcatttggttataagaaaaacttagac |
41453152 |
T |
|
| Q |
108 |
cttgaggatgttcctcagctagatagtagagatagtgtggttggagcttttcctattttcagagacaaacttgaagctgattgtggtgcaatcaatagag |
207 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
41453151 |
cttgaggatgttcctcagctagatagtggagatagtgtggtaggagcttttccaatttttagagaaaaacttgaagctgattgtggtgcagtcaatagag |
41453052 |
T |
|
| Q |
208 |
taaccacacttaagttggttaagtcattgataatctccgggtggaaagaaattcttatcactgcttttcttgcattggtaaacactttttctacttatgt |
307 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| | ||||||||||||||||| ||||||||||| || ||||||| |
|
|
| T |
41453051 |
taaccacacttaagttagttaagtcattgataatctcagggtggaaagagattctttttactgcttttcttgcattattaaacacttttgcttcttatgt |
41452952 |
T |
|
| Q |
308 |
tggtccttatcttattgattcttttgttcaatacattgacggaaaaaggttatatgagaatcaaggctatgtgttggtttcttcctttttatttgcaaag |
407 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
41452951 |
tggtccttatcttattgactcttttgttcaataccttgatggaaaaaggctatacgagaatcaaggctatgtgttggtttctgcatttttctttgcaaag |
41452852 |
T |
|
| Q |
408 |
cttgtagagtgcttaacagaaagacatttgtactttaggttgcagcaactaggacttcgaatccgtgcactgcttgtgacgatcatatataataaagcct |
507 |
Q |
| |
|
|||||||||||||||||| | || |||| || |||||||||||||||||| |||||||||| ||| |||||||||||||| || ||||||| |||||||| |
|
|
| T |
41452851 |
cttgtagagtgcttaacacagaggcattggttctttaggttgcagcaactcggacttcgaacccgagcactgcttgtgactatgatatatagtaaagcct |
41452752 |
T |
|
| Q |
508 |
taacactttcatgtcaatcaaagcagtgtcacagttctggagaaattatcaatttcataactgttgatgccgaaagagttggtacttttggctggtacat |
607 |
Q |
| |
|
||||||||||| ||||||||| ||||| || | |||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| | |||||||| |
|
|
| T |
41452751 |
taacactttcaggtcaatcaagacagtgccatacttctggagaaataatcaatttcatgactgttgatgccgaaagagttggtagtttcagttggtacat |
41452652 |
T |
|
| Q |
608 |
gcatgatttgtggttactggctttgaaagttacattggcattgttaattttgtataagaacattggactcgcttcaattgctacttttgtttcaaccgtt |
707 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||| |||||||||||||||||||||| || ||||||| |||||||||||| |||||||| |||| || |
|
|
| T |
41452651 |
gcatgatttgtggttagtagctttgcaagttacactggcattgttaattttgtataaaaatcttggacttgcttcaattgctgcttttgttgcaactatt |
41452552 |
T |
|
| Q |
708 |
gtggttatgttggcaaatgttccattgggatcattgcaagagaagtttcaagataagttgatggagtcaaa |
778 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41452551 |
attgttatgttagcaaatgttccattgggatcattgcaagagaagtttcaaaataagttgatggagtcaaa |
41452481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 8 - 778
Target Start/End: Complemental strand, 41440082 - 41439312
Alignment:
| Q |
8 |
tgacactgttactcctttttcaaatgctggattttggagtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagac |
107 |
Q |
| |
|
|||||||||||| |||||||| | ||||||| ||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||| || |||||| |
|
|
| T |
41440082 |
tgacactgttacccctttttctactgctggaattttgagtcttctcactttcacttgggtggaaccacttatagcatttggttataagaaaaccttagac |
41439983 |
T |
|
| Q |
108 |
cttgaggatgttcctcagctagatagtagagatagtgtggttggagcttttcctattttcagagacaaacttgaagctgattgtggtgcaatcaatagag |
207 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| |||||| |||||| ||||| ||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
41439982 |
cttgaggatattcctcagctagatagtggagatagtgtcattggagtttttccaatttttagagaaaaacttgaagctgattgtggtgcagtcaatagag |
41439883 |
T |
|
| Q |
208 |
taaccacacttaagttggttaagtcattgataatctccgggtggaaagaaattcttatcactgcttttcttgcattggtaaacactttttctacttatgt |
307 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||| |||||||||||||| ||||| | || |||||| || ||||||| |
|
|
| T |
41439882 |
taaccacacttaagttagttaagtcattaataatctcagggtggaaagagattcttttcactgcttttcttacattgttgaaaacttttgcttcttatgt |
41439783 |
T |
|
| Q |
308 |
tggtccttatcttattgattcttttgttcaatacattgacggaaaaaggttatatgagaatcaaggctatgtgttggtttcttcctttttatttgcaaag |
407 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||| ||||||||| |||| |||||||||||||||||||| |||||| | ||||| ||||||||| |
|
|
| T |
41439782 |
tggtccttatcttattgactcttttgttcaataccttgatggaaaaaggctatacgagaatcaaggctatgtgtttgtttctgcatttttctttgcaaag |
41439683 |
T |
|
| Q |
408 |
cttgtagagtgcttaacagaaagacatttgtactttaggttgcagcaactaggacttcgaatccgtgcactgcttgtgacgatcatatataataaagcct |
507 |
Q |
| |
|
|||||||||||||||||| | || |||| || |||||||||||||||| | |||||| ||| ||| |||||||||||||| || |||||| |||||||| |
|
|
| T |
41439682 |
cttgtagagtgcttaacacagaggcattggttctttaggttgcagcaattcggactttgaacccgagcactgcttgtgactatgatatatggtaaagcct |
41439583 |
T |
|
| Q |
508 |
taacactttcatgtcaatcaaagcagtgtcacagttctggagaaattatcaatttcataactgttgatgccgaaagagttggtacttttggctggtacat |
607 |
Q |
| |
|
||||||||||| ||||||||| ||||| || | ||||||||||| ||||||||||| |||||||||||||||||||||| || || | |||||||| |
|
|
| T |
41439582 |
taacactttcaggtcaatcaagacagtgccatacctctggagaaataatcaatttcatgactgttgatgccgaaagagttgataaattcagttggtacat |
41439483 |
T |
|
| Q |
608 |
gcatgatttgtggttactggctttgaaagttacattggcattgttaattttgtataagaacattggactcgcttcaattgctacttttgtttcaaccgtt |
707 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||| |||||||||||||||||||||| || ||||||| |||||||||||| |||||||| |||| | |
|
|
| T |
41439482 |
gcatgatttgtggttagtagctttgcaagttacactggcattgttaattttgtataaaaatcttggacttgcttcaattgctgcttttgttgcaactatc |
41439383 |
T |
|
| Q |
708 |
gtggttatgttggcaaatgttccattgggatcattgcaagagaagtttcaagataagttgatggagtcaaa |
778 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
41439382 |
attgttatgttagcaaatgttccattgggatcattacaagagaagtttcaaaaaaagttgatggagtcaaa |
41439312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 46 - 591
Target Start/End: Complemental strand, 21111625 - 21111091
Alignment:
| Q |
46 |
gtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagaccttgaggatgttcctcagctagatagtagagatagtgt |
145 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||||||||||||||||||| | |||||| |||||||||| ||| ||||||||| | |||||||||| |
|
|
| T |
21111625 |
gtcttctcactttcacttgggtgggaccacttatagcatttggcaataagaaagccttagacattgaggatgtcccttagctagatactggagatagtgt |
21111526 |
T |
|
| Q |
146 |
ggttggagcttttcctattttcagagacaaacttgaagctgattgtggtgcaatcaatagagtaaccacacttaagttggttaagtcattgataatctcc |
245 |
Q |
| |
|
|||| ||| |||||| | ||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21111525 |
ggtttgagtttttccaactttttcagaaaaacttgaagctgattgtggtgcagtcaatg-----accacacttaagttggttaagtcattgataatctca |
21111431 |
T |
|
| Q |
246 |
gggtggaaagaaattcttatcactgcttttcttgcattggtaaacactttttctacttatgttggtccttatcttattgattcttttgttcaatacattg |
345 |
Q |
| |
|
|| ||||||| |||||| |||||| ||||||||||||| |||||| |||| || |||||| ||||||||| |||||||| ||||||||||| || ||| |
|
|
| T |
21111430 |
ggaaggaaagatattcttttcactgtttttcttgcattgttaaacaattttgcttcttatggtggtccttaacttattgactcttttgttcattatcttg |
21111331 |
T |
|
| Q |
346 |
acggaaaaaggttatatgagaatcaaggctatgtgttggtttcttcctttttatttgcaaagcttgtagagtgcttaacagaaagacatttgtactttag |
445 |
Q |
| |
|
| || |||||| |||||||||||||| ||||||||||||||||| | ||||| ||||| | ||||||||||||||||| | || |||| || | |||| |
|
|
| T |
21111330 |
atgg-aaaaggctatatgagaatcaaagctatgtgttggtttctgcatttttctttgcca---ttgtagagtgcttaacacagaggcattagttccttag |
21111235 |
T |
|
| Q |
446 |
gttgcagcaactaggacttcgaatccgtgcactgcttgtgacgatcatatataataaagccttaacactttcatgtcaatcaaagcagtgtcacagttct |
545 |
Q |
| |
|
|||||||| ||| |||||||||| || |||||||||||||| || |||||||||||||||| |||||||||| || ||| || ||||| || | || | |
|
|
| T |
21111234 |
gttgcagccactcggacttcgaacccaagcactgcttgtgactatgatatataataaagcctcaacactttcaggt-aattaagacagtgccatacttat |
21111136 |
T |
|
| Q |
546 |
ggagaaattatcaatttcataactgttgatgccgaaagagttggta |
591 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| || ||||||||| |
|
|
| T |
21111135 |
ggagaaataatcaatttcatgactgttgatgcc-aacgagttggta |
21111091 |
T |
|
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