View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2784-Insertion-6 (Length: 632)
Name: NF2784-Insertion-6
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2784-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 5921583 - 5921846
Alignment:
| Q |
7 |
agattgaaccaaatggttgcaacgttcccatgcagaccggttaagatcatcaagatcaggttgttcaatggagccattggtgaatccaagcttgttcttc |
106 |
Q |
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| T |
5921583 |
agattgaaccaaatggttgcaacattcccatgcagaccggttaagatcatcaagattgggttgttcaatggagccattgatgaatccaagcttgttcttc |
5921682 |
T |
|
| Q |
107 |
gtgcctagagaacgcttcatggaacgattccaagctagataactggaaccatcaagcttaggagaaacgattaaagatgaaggaccttcacttggatgca |
206 |
Q |
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| T |
5921683 |
gtgcctagagaacgcttcatggaacgattccaagctagataactggaaccatcaagcttaggagaaacaattaaagatgaaggaccttcacttggattca |
5921782 |
T |
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| Q |
207 |
cgcaaaatggagattcttgatcaggaccttgattacgaggagccatggtgaagaagaatcaatg |
270 |
Q |
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| T |
5921783 |
cgtgaaatggagattcttgatcaggaccttgattacgaggagccatggtgaagaagaatcaatg |
5921846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 337 - 540
Target Start/End: Original strand, 5921913 - 5922116
Alignment:
| Q |
337 |
aagcaacaaatacacagagaacgaagcttgaagacgaagcaatcaagcacaaaaatgaagaatcaagcacagaatcatgaagattcagtgaagaagatga |
436 |
Q |
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| T |
5921913 |
aagcaacaaatacatagagaacgaagcttgaagacgaagcaatcaggcacaaaaatgaagaatcaagcacataatcatgaagattcagtgaagaagatga |
5922012 |
T |
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| Q |
437 |
aggagagagggaaaattgcagcggaagttgttagaaaaaatggttatggatcgtaacaaactcccccattggaggagaagaaactgataccatattaaga |
536 |
Q |
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| T |
5922013 |
aggagagagggaaaattgcagcggaagttgttagaaaaaacggttatggatcgtaacaaactccctcattgaaggagaagaaactgataccatatcaaga |
5922112 |
T |
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| Q |
537 |
gaga |
540 |
Q |
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|||| |
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| T |
5922113 |
gaga |
5922116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 584 - 629
Target Start/End: Original strand, 5922332 - 5922377
Alignment:
| Q |
584 |
gtttatttgaaatttgaatataattataaggtaatactttcatcaa |
629 |
Q |
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| T |
5922332 |
gtttatttgaaatttgaatataattacaaggtaatactttcatcaa |
5922377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 26968034 - 26967837
Alignment:
| Q |
7 |
agattgaaccaaatggttgcaacgttcccatgcagaccggttaagatcatcaagatcaggttgttcaatggagccattggtgaatccaagcttgttcttc |
106 |
Q |
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|||||||||||| || |||| |||||||| || ||||||||||| ||||| |||||| |||||| || ||| ||||| |||| |||||||| |
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| T |
26968034 |
agattgaaccaagtgattgctgcgttcccaaacactacggttaagatcttcaaggtcaggtgtaggaatggatccgttgttgaattcaagtttgttcttt |
26967935 |
T |
|
| Q |
107 |
gtgcctagagaacgcttcatggaacgattccaagctagataactggaaccatcaagcttaggagaaacgattaaagatgaaggaccttcacttggatg |
204 |
Q |
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| T |
26967934 |
gttcccaatgaacgcttcatggaatgattccacaccacatagttggaaccatcaagtttgggagaaacaatgagggaagaaggaccttcactcggatg |
26967837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 26 - 267
Target Start/End: Original strand, 20325904 - 20326145
Alignment:
| Q |
26 |
caacgttcccatgcagaccggttaagatcatcaagatcaggttgttcaatggagccattggtgaatccaagcttgttcttcgtgcctagagaacgcttca |
125 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||| ||||||||||||||||||| |
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| T |
20325904 |
caacgttcccatgcagatcgattaagatcatcaagatcaggttgttcaattgagccattgataaaaccaagcttgttctttgtgcctagagaacgcttca |
20326003 |
T |
|
| Q |
126 |
tggaacgattccaagctagataactggaaccatcaagcttaggagaaacgattaaagatgaaggaccttcacttggatgcacgcaaaatggagattcttg |
225 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||| |
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| T |
20326004 |
tggaacgattccaagctagataattggaaccatcaagtttaggagaaacgattaacgatgaaggaccttcacttggatgaacgtaaaaaggagattcttg |
20326103 |
T |
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| Q |
226 |
atcaggaccttgattacgaggagccatggtgaagaagaatca |
267 |
Q |
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| T |
20326104 |
atcaggaccttgattacgaggaggcatggtgaagaagaatca |
20326145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 336 - 556
Target Start/End: Original strand, 20326168 - 20326387
Alignment:
| Q |
336 |
gaagcaacaaatacacagagaacgaagcttgaagacgaagcaatcaagcacaaaaatga-agaatcaagcacagaatcatgaagattcagtgaagaagat |
434 |
Q |
| |
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|||||||||||| | |||| ||| |||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||| |
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| T |
20326168 |
gaagcaacaaattctcagaaaacaaagcttgaagacgaagcaatcaagcacaaaaaaaagagaatcaatcacagaatcatgaagattcaatgaagaagat |
20326267 |
T |
|
| Q |
435 |
gaaggagagagggaaaattgcagcggaagttgttagaaaaaatggttatggatcgtaacaaactcccccattggaggagaagaaactgataccatattaa |
534 |
Q |
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|| ||| | ||| ||||||||||||||||| ||||||||| | |||||||||| |||||||||| || |||| ||||||||||||||||||||||||| |
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| T |
20326268 |
gatggaaaaaggaaaaattgcagcggaagtagttagaaaaggttgttatggatcttaacaaactctccaattgaaggagaagaaactgataccatatta- |
20326366 |
T |
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| Q |
535 |
gagagaaagaatatgaatgaaa |
556 |
Q |
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||||||||||||||||||||| |
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| T |
20326367 |
-agagaaagaatatgaatgaaa |
20326387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 500 - 561
Target Start/End: Original strand, 36164903 - 36164964
Alignment:
| Q |
500 |
ccccattggaggagaagaaactgataccatattaagagagaaagaatatgaatgaaaagtgt |
561 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36164903 |
cccccttgaaggagaagaaactgataccatattaagagagaaagaatatgaatgaaaagtgt |
36164964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 34503809 - 34503900
Alignment:
| Q |
47 |
ttaagatcatcaagatcaggttgttcaatggagccattggtgaatccaagcttgttcttcgtgcctagagaacgcttcatggaacgattcca |
138 |
Q |
| |
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|||||||| |||||||||||| |||||| |||||| ||||||||| ||||||||||| | || || ||||||||||||| ||||||| |
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| T |
34503809 |
ttaagatcttcaagatcaggtgtgggaatggaaccattgatgaatccaattttgttcttcgttcttaaagcacgcttcatggaatgattcca |
34503900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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