View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2784R-Insertion-3 (Length: 663)

Name: NF2784R-Insertion-3
Description: NF2784R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2784R-Insertion-3
NF2784R-Insertion-3
[»] chr4 (1 HSPs)
chr4 (9-663)||(53248705-53249356)


Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 9 - 663
Target Start/End: Complemental strand, 53249356 - 53248705
Alignment:
Q  9 tatacttggttaatgtgtaatcaggttttatactttctatgtaagtaaggataggaataggctggaccgactgaccgacctagactttacaaataccaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| ||||||    
T  53249356 tatacttggttaatgtgtaatcaggttttatactttctatgtaagtaaggataggaataggctggaccgac----cgacctagactttacaaacaccaaa 53249261  T
Q  109 catggcttggactaacacttcaaggcataggactgatctgtagtctgtcatagtcagaaacttaaatttaggcttgagtctgcaattattttatgaacat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53249260 catggcttggactaacacttcaaggcataggactgatctgtagtctgtcatagtcataaacttaaatttaggcttgagtctgcaattattttatgaacat 53249161  T
Q  209 atttaaataagcaatattatctatatctaaacaaactaatgcgctaatagacgaacaaggttgacctccattttgatattacaatcacccttgtcggtta 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  53249160 atttaaataagcaatattatctatatctaaacaaactaatgcgctaatagaagaacaagattgaactccattttgatattacaatcacccttgtcggtta 53249061  T
Q  309 gcctgacttattctcatccctatctgtaagtatagaaaagactcacaagaaaagttacttattttaaccacttttttatgctttctcatccgcctcttct 408  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53249060 gcctgacttattctcatccctacctgtaagtatagaaaagactaacaagaaaagttacttattttaaccacttttttatgctttctcatccgcctcttct 53248961  T
Q  409 tagcactggtaagttttactaggctaaattgatttaaaattaaatgttaaatgctgaannnnnnnccataaaagagaaaggaaagaaatatatgatatac 508  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  53248960 tagcactggtaagttttaccaggct-aattgatttaaaattaaatgttaaatgctgaatttttttccataaaagagaaaggaaagaaatatatgatatac 53248862  T
Q  509 tgatatagtcgac-ttcnnnnnnnnnnnnnnatctttctgttaatgtacacactactgattattttgcattgaggtggcctgtaaaattgtagttgcccc 607  Q
    ||||||||||||| |||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  53248861 tgatatagtcgactttctttttcgtttttttatctttctgttaatgtacacactactgattattttgcattgaggtggcctgtaaaattgtagttgcctc 53248762  T
Q  608 ctcc-nnnnnnnngctcaaccaagtgagctacccatcccccctcccaaaattgttgc 663  Q
    ||||         |||||||||||||||||||||||||||||||||||||| |||||    
T  53248761 ctcctttttttttgctcaaccaagtgagctacccatcccccctcccaaaatagttgc 53248705  T

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