View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2784R-Insertion-4 (Length: 580)
Name: NF2784R-Insertion-4
Description: NF2784R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2784R-Insertion-4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 9 - 568
Target Start/End: Complemental strand, 47608436 - 47607875
Alignment:
| Q |
9 |
atatttaacatcaaacagttccaaaacaattctaaagttatattggttttaaacnnnnnnncaatgaagcatgttcacaacaacaagaaacaatgtcatt |
108 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47608436 |
atatttaacatcaaagagttccaaaacaattctaaagttatattggttttaaacaaaaaaacaatgaagcatgttcacaacaacaagaaacaatgtcatt |
47608337 |
T |
|
| Q |
109 |
atattcaaaatgaagaaagctcgggtgattttattgaagaatacctgagcgaattgagctataagttcatcaatgtccttcttgaaattatccgtattca |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47608336 |
atattcaaaatgaagaaagctcgggtgattttattgaagaatacctgagcgaattgatctataagttcatcaatgtccttcttgaaattatccgtattca |
47608237 |
T |
|
| Q |
209 |
tggtgaagaaccctaatttacatcagagaaatctgtagcagcaagttgtgaaaaaggtgagaacaaagtacatagataaaccttgaaaagcaagaagaac |
308 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47608236 |
tggtgaagaaccctaatttacagcagagaaatctgtagcagcaggttgtgaaaaaggtgagaacaaagtacatagataaaccttgaaaagcaagaagaac |
47608137 |
T |
|
| Q |
309 |
gtgttaattcgttgaatcaaacagttaatgtgcaaccgaagaagaagaaggtgaaattaccagttaccatagagaattgagcg--nnnnnnnnnncagag |
406 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||| ||||| |
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| T |
47608136 |
gtgttaattcgttgaatcaaatagttaatgtgcaacggaagaagaagaaggtgaaattaccatttagcatagagaattgagcgaaaaaaaaaaaacagag |
47608037 |
T |
|
| Q |
407 |
tggtagggagctgcagtgtttcgaacagcttgtgagggtgctgtctggtgtgaggaatagctcctgcgcacctgcagnnnnnnnctgttggggattttgt |
506 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
47608036 |
tggtggggagctgcagtgtttcgaacagcttgtgagggtgctgtctggtgtgaggaatagctcctgcgcacatgcagtttttttctgttggggattttgt |
47607937 |
T |
|
| Q |
507 |
tttgcagtttggtttggggcctgtgtcaggggtgcttttgcgcccttatgttttttcctttc |
568 |
Q |
| |
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| T |
47607936 |
tttgcagtttggtttggggcctgtgtcaggggtgcttttgcgcccttttgtttttttctttc |
47607875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 143 - 389
Target Start/End: Complemental strand, 49542966 - 49542718
Alignment:
| Q |
143 |
tgaagaatacctgagcgaattgagctataagttcatcaatgtccttctt-gaaattatccgtattcatggtgaagaaccctaatttacatcagagaaatc |
241 |
Q |
| |
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||||||||||||||| ||||||||||||||| | |||||||||||| || |||||||||| |||||||||||||||||| |||||| | | | || |
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|
| T |
49542966 |
tgaagaatacctgagtgaattgagctataaggttatcaatgtccttgtttgaaattatccatattcatggtgaagaaccgtaatttg--tgaaccatatt |
49542869 |
T |
|
| Q |
242 |
tgtagcagcaagttgtgaaaaaggtgagaacaaagtacatagataaaccttgaaaagcaagaagaacgtgttaattcgttgaatcaaacagttaatgtgc |
341 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
49542868 |
catagcagcaaattgtgaaaaaggtcaaaacaaagtacatagataaaccttgaaaagcaagaagaacgtgttcattcattgaatcaaacagttaatgtgc |
49542769 |
T |
|
| Q |
342 |
aaccgaagaagaa---gaaggtgaaattaccagttaccatagagaattgag |
389 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
49542768 |
aaccgaagaagaagaagaaggtgaaattaccagttagcagagagaattgag |
49542718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 126167 - 125911
Alignment:
| Q |
9 |
atatttaacatcaaacagttccaaaacaattctaaagttatattggttttaaacnnnnnnncaatgaagcatgttcacaacaacaagaaacaatgtcatt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
126167 |
atatttaacatcaaacagttccaaaacaattctaaagcta-attggttttaaactgaaaa-caat-aagcatgttcacaacaacaagaaacaatgtcatt |
126071 |
T |
|
| Q |
109 |
atattcaaaatgaagaaagctcgggtgattttattgaagaatacctgagcgaattgagctataagttcatcaatgtccttcttgaaattatccgtattca |
208 |
Q |
| |
|
||||||||||||| |||||| | |||| | ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
126070 |
atattcaaaatgaggaaagcatgaatgataaatataaagaatacctgtgtgaattgagctataagttcatcaatgtccttcttgaaattatccatattca |
125971 |
T |
|
| Q |
209 |
tggtgaagaaccctaatttacatcagagaaatctgtagcagcaagttgtgaaaaaggtga |
268 |
Q |
| |
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||| || |||||||| || || || |||| ||||||||||||||||||||||| ||||| |
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|
| T |
125970 |
tggcgagtaaccctaaattgcagcaaagaagtctgtagcagcaagttgtgaaaagggtga |
125911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 52893027 - 52893135
Alignment:
| Q |
117 |
aatgaagaaagctcgggtgattttattgaagaatacctgagcgaattgagctataagttcatcaatgtccttcttgaaattatccgtattcatggtgaag |
216 |
Q |
| |
|
||||| |||||| |||||||| ||||| |||||||||| |||||||||||| |||||| ||||||||||||||||| ||| |||||||||||||| |
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| T |
52893027 |
aatgaggaaagcacgggtgataaatttgaacaatacctgagtgaattgagctatgagttcaccaatgtccttcttgaaacagtccatattcatggtgaag |
52893126 |
T |
|
| Q |
217 |
aaccctaat |
225 |
Q |
| |
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||||||||| |
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|
| T |
52893127 |
aaccctaat |
52893135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 323 - 374
Target Start/End: Original strand, 52894394 - 52894442
Alignment:
| Q |
323 |
aatcaaacagttaatgtgcaaccgaagaagaagaaggtgaaattaccagtta |
374 |
Q |
| |
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|||||||||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
52894394 |
aatcaaacagtttatgtgcaacc---gaagaagaaggtgaaattaccagtta |
52894442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 27015216 - 27015126
Alignment:
| Q |
167 |
ctataagttcatcaatgtccttcttgaaattatccgtattcatggtgaagaaccctaatttacatcagagaaatctgtagcagcaagttgt |
257 |
Q |
| |
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||||||||| ||| ||||||||||||||| ||| |||||||||||||| ||||||||| || ||||||||| |||| ||||||||||| |
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|
| T |
27015216 |
ctataagtttgtcattgtccttcttgaaataatcaacattcatggtgaagatccctaatttgcaccagagaaatatgtaccagcaagttgt |
27015126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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