View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2784R-Insertion-6 (Length: 425)

Name: NF2784R-Insertion-6
Description: NF2784R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2784R-Insertion-6
NF2784R-Insertion-6
[»] chr2 (36 HSPs)
chr2 (9-425)||(43808313-43808729)
chr2 (197-286)||(33267572-33267661)
chr2 (189-272)||(11307229-11307312)
chr2 (197-272)||(18962108-18962183)
chr2 (197-272)||(9478224-9478299)
chr2 (197-272)||(17952771-17952846)
chr2 (202-272)||(28902007-28902077)
chr2 (169-266)||(15171147-15171244)
chr2 (197-269)||(3102618-3102690)
chr2 (197-285)||(14209202-14209290)
chr2 (317-382)||(43456649-43456714)
chr2 (188-272)||(29430672-29430755)
chr2 (188-228)||(44606202-44606242)
chr2 (226-276)||(3458610-3458661)
chr2 (166-272)||(28803576-28803682)
chr2 (317-376)||(29430821-29430880)
chr2 (320-362)||(1625967-1626009)
chr2 (188-269)||(3423841-3423922)
chr2 (200-257)||(5998787-5998844)
chr2 (197-270)||(37053519-37053592)
chr2 (200-238)||(42826314-42826352)
chr2 (239-272)||(1160814-1160847)
chr2 (314-351)||(18525210-18525247)
chr2 (240-285)||(19243577-19243622)
chr2 (197-277)||(34339048-34339128)
chr2 (211-272)||(40722547-40722606)
chr2 (197-230)||(44458450-44458483)
chr2 (317-374)||(44606060-44606117)
chr2 (317-357)||(1741999-1742039)
chr2 (199-270)||(3673734-3673805)
chr2 (228-272)||(5043630-5043674)
chr2 (204-251)||(5045248-5045295)
chr2 (199-227)||(13864577-13864605)
chr2 (240-272)||(31740029-31740061)
chr2 (240-272)||(37292417-37292449)
chr2 (187-227)||(43965245-43965285)
[»] chr5 (30 HSPs)
chr5 (187-272)||(35135732-35135817)
chr5 (197-272)||(32059659-32059733)
chr5 (202-286)||(32197657-32197741)
chr5 (172-269)||(20982208-20982305)
chr5 (169-227)||(26516195-26516253)
chr5 (197-286)||(11684348-11684435)
chr5 (197-265)||(29014681-29014749)
chr5 (197-272)||(36539671-36539746)
chr5 (199-270)||(37063146-37063217)
chr5 (203-270)||(41277422-41277490)
chr5 (187-238)||(4991048-4991098)
chr5 (331-382)||(7550460-7550511)
chr5 (322-357)||(8090004-8090039)
chr5 (317-371)||(11297149-11297203)
chr5 (324-374)||(12407680-12407730)
chr5 (197-263)||(29365544-29365609)
chr5 (315-365)||(37611174-37611224)
chr5 (315-365)||(37787904-37787954)
chr5 (197-269)||(6733966-6734037)
chr5 (198-266)||(7096203-7096271)
chr5 (169-238)||(33961600-33961668)
chr5 (315-388)||(40534260-40534333)
chr5 (315-375)||(4619768-4619828)
chr5 (167-227)||(6738522-6738582)
chr5 (240-272)||(8158371-8158403)
chr5 (203-255)||(8571302-8571353)
chr5 (317-357)||(10152397-10152437)
chr5 (315-347)||(11406255-11406287)
chr5 (318-362)||(12242672-12242716)
chr5 (317-357)||(14980572-14980612)
[»] chr1 (29 HSPs)
chr1 (197-270)||(45107548-45107620)
chr1 (208-272)||(48830146-48830210)
chr1 (321-376)||(4033965-4034020)
chr1 (189-270)||(30815707-30815789)
chr1 (205-270)||(1232964-1233029)
chr1 (189-273)||(870962-871046)
chr1 (319-372)||(16980868-16980921)
chr1 (205-261)||(1730825-1730881)
chr1 (192-263)||(48282053-48282125)
chr1 (317-364)||(49692012-49692059)
chr1 (197-251)||(3244829-3244883)
chr1 (187-272)||(4200144-4200229)
chr1 (316-374)||(4757400-4757458)
chr1 (320-362)||(6557039-6557081)
chr1 (197-262)||(33339500-33339565)
chr1 (317-374)||(38867783-38867838)
chr1 (172-238)||(46504322-46504387)
chr1 (191-272)||(52286597-52286678)
chr1 (185-272)||(4256112-4256200)
chr1 (317-354)||(6262801-6262838)
chr1 (333-370)||(7707269-7707306)
chr1 (197-272)||(28467377-28467454)
chr1 (316-357)||(28467495-28467536)
chr1 (317-374)||(34536221-34536278)
chr1 (203-235)||(7357455-7357487)
chr1 (240-272)||(9656618-9656650)
chr1 (205-272)||(15360827-15360894)
chr1 (169-272)||(17420100-17420203)
chr1 (187-282)||(23895251-23895346)
[»] scaffold0590 (1 HSPs)
scaffold0590 (197-271)||(1145-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (197-271)||(2756-2830)
[»] chr4 (32 HSPs)
chr4 (169-275)||(22684583-22684689)
chr4 (169-270)||(54414846-54414950)
chr4 (197-264)||(28581988-28582054)
chr4 (169-251)||(8422928-8423010)
chr4 (322-376)||(18628501-18628555)
chr4 (317-371)||(27123305-27123359)
chr4 (317-374)||(2996636-2996693)
chr4 (187-272)||(44319865-44319949)
chr4 (211-270)||(437504-437564)
chr4 (187-270)||(24193500-24193583)
chr4 (317-356)||(27725277-27725316)
chr4 (319-374)||(33534119-33534174)
chr4 (203-269)||(42321952-42322018)
chr4 (197-272)||(54325107-54325182)
chr4 (197-272)||(55437356-55437429)
chr4 (197-251)||(32920491-32920543)
chr4 (199-264)||(47970245-47970310)
chr4 (315-364)||(1554968-1555017)
chr4 (200-272)||(4071811-4071882)
chr4 (240-269)||(5219573-5219602)
chr4 (197-270)||(23819015-23819087)
chr4 (197-269)||(36734818-36734890)
chr4 (192-272)||(49219059-49219139)
chr4 (322-355)||(52428733-52428766)
chr4 (198-251)||(54986348-54986400)
chr4 (230-266)||(12162911-12162947)
chr4 (197-272)||(21157693-21157768)
chr4 (169-272)||(30024597-30024700)
chr4 (199-271)||(32724046-32724118)
chr4 (195-227)||(52645623-52645655)
chr4 (169-221)||(55599063-55599115)
chr4 (308-364)||(56007734-56007789)
[»] chr8 (24 HSPs)
chr8 (317-375)||(21130675-21130733)
chr8 (188-272)||(34788497-34788581)
chr8 (189-270)||(2699223-2699304)
chr8 (187-272)||(28769409-28769494)
chr8 (204-268)||(4558730-4558794)
chr8 (197-270)||(10722556-10722629)
chr8 (211-286)||(26215435-26215510)
chr8 (204-255)||(2595084-2595134)
chr8 (218-272)||(42237492-42237547)
chr8 (317-371)||(9700064-9700118)
chr8 (317-371)||(14949929-14949983)
chr8 (197-271)||(26717182-26717254)
chr8 (169-227)||(31875674-31875732)
chr8 (172-272)||(3645886-3645986)
chr8 (188-272)||(11056737-11056821)
chr8 (322-355)||(27412851-27412884)
chr8 (199-274)||(29262942-29263016)
chr8 (315-364)||(30191101-30191150)
chr8 (197-229)||(6918956-6918988)
chr8 (332-388)||(10923674-10923730)
chr8 (316-376)||(11376765-11376825)
chr8 (197-229)||(11952478-11952510)
chr8 (320-372)||(31915245-31915297)
chr8 (197-276)||(40357824-40357903)
[»] chr7 (26 HSPs)
chr7 (189-272)||(40428471-40428555)
chr7 (197-272)||(49060465-49060540)
chr7 (317-376)||(3500913-3500974)
chr7 (316-382)||(22387838-22387904)
chr7 (319-353)||(31149705-31149739)
chr7 (319-353)||(31167997-31168031)
chr7 (197-270)||(45593791-45593864)
chr7 (169-272)||(26935620-26935723)
chr7 (187-227)||(27389298-27389338)
chr7 (197-272)||(36370595-36370669)
chr7 (332-376)||(44151424-44151468)
chr7 (197-245)||(45078218-45078265)
chr7 (197-267)||(47004012-47004082)
chr7 (169-227)||(28844383-28844441)
chr7 (317-362)||(44808221-44808266)
chr7 (187-227)||(1431423-1431463)
chr7 (316-364)||(8094368-8094416)
chr7 (197-272)||(22759111-22759186)
chr7 (201-272)||(27481364-27481435)
chr7 (187-223)||(27517969-27518005)
chr7 (190-269)||(30496622-30496701)
chr7 (187-270)||(31341109-31341192)
chr7 (191-270)||(35536026-35536105)
chr7 (315-371)||(36537969-36538025)
chr7 (197-272)||(39551618-39551693)
chr7 (240-272)||(40689056-40689088)
[»] chr6 (28 HSPs)
chr6 (205-287)||(2034494-2034575)
chr6 (187-272)||(7351678-7351763)
chr6 (199-273)||(32513752-32513825)
chr6 (197-272)||(10452430-10452505)
chr6 (317-364)||(1669758-1669805)
chr6 (188-270)||(3217262-3217344)
chr6 (315-362)||(20368142-20368189)
chr6 (317-371)||(2460104-2460158)
chr6 (169-227)||(32975875-32975933)
chr6 (240-272)||(1402964-1402996)
chr6 (197-272)||(10032496-10032571)
chr6 (315-371)||(27693392-27693448)
chr6 (169-271)||(9833168-9833270)
chr6 (187-254)||(24332858-24332924)
chr6 (317-376)||(32577934-32577993)
chr6 (187-272)||(22742281-22742366)
chr6 (200-238)||(30817671-30817709)
chr6 (317-371)||(30863309-30863363)
chr6 (318-372)||(30865547-30865601)
chr6 (169-227)||(33068676-33068734)
chr6 (199-274)||(27693507-27693581)
chr6 (319-376)||(27857423-27857480)
chr6 (317-370)||(32917260-32917313)
chr6 (201-257)||(33911366-33911422)
chr6 (226-269)||(2027479-2027523)
chr6 (197-265)||(8010282-8010349)
chr6 (226-269)||(28660833-28660877)
chr6 (327-371)||(31668430-31668474)
[»] chr3 (30 HSPs)
chr3 (316-364)||(2175809-2175857)
chr3 (195-270)||(25459696-25459770)
chr3 (197-266)||(16790432-16790501)
chr3 (319-364)||(25182947-25182992)
chr3 (197-272)||(25183058-25183134)
chr3 (187-228)||(28842971-28843012)
chr3 (197-268)||(38462206-38462277)
chr3 (197-229)||(49772781-49772813)
chr3 (317-364)||(1810040-1810087)
chr3 (188-270)||(22232742-22232824)
chr3 (190-272)||(28779274-28779356)
chr3 (197-272)||(32703063-32703138)
chr3 (318-357)||(40880915-40880954)
chr3 (327-374)||(47584523-47584570)
chr3 (316-371)||(50015948-50016003)
chr3 (169-266)||(12985399-12985497)
chr3 (315-357)||(21574551-21574593)
chr3 (323-361)||(47132063-47132101)
chr3 (315-388)||(50004713-50004787)
chr3 (212-272)||(1395611-1395671)
chr3 (319-364)||(14548681-14548726)
chr3 (169-269)||(33965564-33965665)
chr3 (315-371)||(2304224-2304280)
chr3 (187-251)||(9279417-9279481)
chr3 (217-272)||(37689454-37689509)
chr3 (197-272)||(41028921-41028996)
chr3 (213-276)||(42809242-42809305)
chr3 (197-272)||(43116498-43116573)
chr3 (183-266)||(44284134-44284217)
chr3 (324-364)||(50211805-50211845)
[»] scaffold0153 (2 HSPs)
scaffold0153 (240-272)||(6568-6600)
scaffold0153 (240-272)||(13588-13620)
[»] scaffold0024 (1 HSPs)
scaffold0024 (211-286)||(21334-21409)


Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 9 - 425
Target Start/End: Original strand, 43808313 - 43808729
Alignment:
Q  9 gtttgtctactggattttagatcactttactttgtttttgtgcattcacttggtagtaagtaagtagtgaacataaagtgatttttatatgtgtctaggc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808313 gtttgtctactggattttagatcactttactttgtttttgtgcattcactttgtagtaagtaagtagtgaacataaagtgatttttatatgtgtctaggc 43808412  T
Q  109 ttaggaaggccatagattttgttgatctaatctaacagattatttgttggataaaatagtttaattaagtgttgataccataagcgcgtatcatataagt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  43808413 ttaggaaggccatagattttgttgatctaatctaacagattatttgttggataaaatagtttaattaagtgtttatagcataagcgcgtatcatataagt 43808512  T
Q  209 gtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagctaataagctgaaaataacttatgg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808513 gtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagctaataagctgaaaataacttatgg 43808612  T
Q  309 acaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaatctaaacatgttctcattat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808613 acaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaatctaaacatgttctcattat 43808712  T
Q  409 aagttcactttaagtct 425  Q
    |||||||||||||||||    
T  43808713 aagttcactttaagtct 43808729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 33267661 - 33267572
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaaca-taaaataaagttaaactattttcatataagctgtttctataagcta 286  Q
    ||||||||||||| |||||||||| |||||| | |||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||    
T  33267661 tatcatataagtgcttatgtataatctatttct-ataacaaacagtaaaataaagttaaactgttttcatataagctgtttttataagcta 33267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 11307229 - 11307312
Alignment:
Q  189 taagcgcgtatcatataagtgtttatgtataagctattttttat-aacaaacataaaataaagttaaactattttcatataagct 272  Q
    ||||||| ||||||| ||||||| |||||||||||||||||| | |||||| ||||| |||||| |||||||||||||| |||||    
T  11307229 taagcgcttatcataaaagtgtt-atgtataagctatttttttttaacaaagataaagtaaagtcaaactattttcataaaagct 11307312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 18962183 - 18962108
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    |||||| |||||| |||||||| |||||||||| ||||||||  |||||||||||||||||| ||||||||||||||    
T  18962183 tatcatgtaagtgcttatgtattagctattttt-ataacaaaagataaaataaagttaaactgttttcatataagct 18962108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 9478224 - 9478299
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||||||||||||||||||| ||| |||||||  | |||||||||| | ||| ||||||||||||||||    
T  9478224 tatcatataagtgtttatgtataagcta-tttctataacagtagataaaataaactcaaaatattttcatataagct 9478299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 17952846 - 17952771
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    ||||||||||| | |||| |||||||||||| | ||||||||  |||||||||||| ||||||||||||||||||||    
T  17952846 tatcatataagagcttatatataagctatttct-ataacaaaagataaaataaagtcaaactattttcatataagct 17952771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 28902007 - 28902077
Alignment:
Q  202 tataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagct 272  Q
    |||||||| |||||||||||||| ||||||||||| ||  ||||||||| ||||||| ||||||||||||||    
T  28902007 tataagtgcttatgtataagcta-tttttataacataagttaaaataaaattaaactgttttcatataagct 28902077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 15171147 - 15171244
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcata 266  Q
    ||||||||||||| ||| ||||||| |||||  |||||||||||||||||||| | |||| ||||||| || ||||| |||||| ||| | ||||||||    
T  15171147 ttaattaagtgtttatagcataagctcgtattttataagtgtttatgtataag-ttttttctataacagaagataaattaaagtcaaaatgttttcata 15171244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 3102618 - 3102690
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataa 269  Q
    |||||||||| || |||||||||||||| |||||||| | ||| |||||||||||| |||||||||| ||||||    
T  3102618 tatcatataactgcttatgtataagcta-tttttatagcaaaatataaaataaagtcaaactatttttatataa 3102690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 285
Target Start/End: Original strand, 14209202 - 14209290
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgtttctataagct 285  Q
    |||||||||||||||| ||| ||||||||||   ||||||||  |||||||||| | ||||| |||||||||||||| |||| |||||||    
T  14209202 tatcatataagtgtttctgtctaagctatttca-ataacaaaagataaaataaattcaaactgttttcatataagctatttccataagct 14209290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 382
Target Start/End: Complemental strand, 43456714 - 43456649
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 382  Q
    ||||||||| |||| |||||| ||||||| ||||| |||||||||||| ||||||| ||| |||||    
T  43456714 acatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgtgagtaaataa 43456649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 29430672 - 29430755
Alignment:
Q  188 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 272  Q
    |||||||  ||||||| ||| |||||||||||||||| ||| |||||||||  | ||||||||| ||||| ||||| ||||||||    
T  29430672 ataagcgtttatcatacaagggtttatgtataagcta-tttctataacaaaagttaaataaagtcaaactgttttcttataagct 29430755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 44606242 - 44606202
Alignment:
Q  188 ataagcgcgtatcatataagtgtttatgtataagctatttt 228  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  44606242 ataagcgcttattatataagtgtttatgtataagctatttt 44606202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 3458610 - 3458661
Alignment:
Q  226 tttttataacaaac-ataaaataaagttaaactattttcatataagctgttt 276  Q
    |||||||||||||  |||||||||||| ||||| ||||||||||||||||||    
T  3458610 tttttataacaaaagataaaataaagtcaaacttttttcatataagctgttt 3458661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 272
Target Start/End: Complemental strand, 28803682 - 28803576
Alignment:
Q  166 agtttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttca 264  Q
    |||||||||||||||| ||  |||||  || ||||||||||||| |||| |||||| || |||  ||||| ||| |||||||||||| |||||  |||||    
T  28803682 agtttaattaagtgtttatggcataaatgcttatcatataagtgcttatatataagtta-tttcgataacaaaagataaaataaagtcaaactgatttca 28803584  T
Q  265 tataagct 272  Q
    ||||||||    
T  28803583 tataagct 28803576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 29430821 - 29430880
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 376  Q
    |||||||||||| |||||||||||| |||  |||||||||  |||||| |||||||||||    
T  29430821 acatgtcataagctattttcataagttcttccaaatagtcccacaagtgtttatgtcagt 29430880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 362
Target Start/End: Original strand, 1625967 - 1626009
Alignment:
Q  320 tgtcataagttattttcataagctctctcaaatagtcttacaa 362  Q
    ||||||||| || ||||||||| ||||||||||||||||||||    
T  1625967 tgtcataagctactttcataagttctctcaaatagtcttacaa 1626009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 269
Target Start/End: Complemental strand, 3423922 - 3423841
Alignment:
Q  188 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataa 269  Q
    ||||| || ||||||| ||||||||||||||||| |||||||  || ||||  |||||||||||| ||| |||||||||||||    
T  3423922 ataagtgcttatcatacaagtgtttatgtataagttatttttg-taccaaaagataaaataaagtcaaattattttcatataa 3423841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 5998844 - 5998787
Alignment:
Q  200 catataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaact 257  Q
    ||||||| ||||||| |||||||||| ||||||||| ||| ||||||||||||||||||    
T  5998844 catataattgtttatatataagctat-ttttataacaaaagataaaataaagttaaact 5998787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 37053519 - 37053592
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataag 270  Q
    ||||||||||||| |||||||||  |||||| | |||||| || |||||||||||| ||||| ||||||||||||    
T  37053519 tatcatataagtgcttatgtatagactatttct-ataacagaaaataaaataaagtcaaactgttttcatataag 37053592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 42826314 - 42826352
Alignment:
Q  200 catataagtgtttatgtataagctattttttataacaaa 238  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  42826314 catataagtgcttatatataagctattttttataacaaa 42826352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 1160847 - 1160814
Alignment:
Q  239 cataaaataaagttaaactattttcatataagct 272  Q
    ||||||||||||| ||||||||||||||||||||    
T  1160847 cataaaataaagtcaaactattttcatataagct 1160814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 18525247 - 18525210
Alignment:
Q  314 cgaacatgtcataagttattttcataagctctctcaaa 351  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  18525247 cgaatatgtcataagctattttcataagctctctcaaa 18525210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 19243577 - 19243622
Alignment:
Q  240 ataaaataaagttaaactattttcatataagctgtttctataagct 285  Q
    |||||||||| ||||| | |||| ||||||||||||||||||||||    
T  19243577 ataaaataaatttaaattgttttgatataagctgtttctataagct 19243622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 34339048 - 34339128
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctgtttc 277  Q
    ||||||||||||| |||||||||| || |||| |||| | ||| |||||||||||| | ||| ||||| |||||||||||||    
T  34339048 tatcatataagtgcttatgtataaact-ttttctatagctaaagataaaataaagtcagactgttttcgtataagctgtttc 34339128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 40722606 - 40722547
Alignment:
Q  211 ttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 272  Q
    ||||| ||||||| |||||||||||||| ||||||||||||  |||| ||||||||||||||    
T  40722606 ttatgcataagct-ttttttataacaaa-ataaaataaagtcgaactgttttcatataagct 40722547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 44458483 - 44458450
Alignment:
Q  197 tatcatataagtgtttatgtataagctatttttt 230  Q
    |||||||||||| |||||||||||||||||||||    
T  44458483 tatcatataagtatttatgtataagctatttttt 44458450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 44606117 - 44606060
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 374  Q
    |||||||||||||| |||||||||| |||  |||| |||| |||||||| ||||||||    
T  44606117 acatgtcataagttgttttcataagttcttccaaacagtcgtacaagtacttatgtca 44606060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 1742039 - 1741999
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtct 357  Q
    |||||||||||||| ||| ||||||||||| ||||||||||    
T  1742039 acatgtcataagttgtttccataagctctcccaaatagtct 1741999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 3673734 - 3673805
Alignment:
Q  199 tcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 270  Q
    ||||||||||| |||||||| || ||||| | ||||||||  |||||||||||||||| | ||||||||||||    
T  3673734 tcatataagtgcttatgtattagttatttct-ataacaaaatataaaataaagttaaattgttttcatataag 3673805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 5043674 - 5043630
Alignment:
Q  228 tttataacaaacataaaataaagttaaactattttcatataagct 272  Q
    ||||||| ||| |||||||||||| ||||| ||||||||||||||    
T  5043674 tttataagaaagataaaataaagtcaaactgttttcatataagct 5043630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 5045295 - 5045248
Alignment:
Q  204 taagtgtttatgtataagctattttttataac-aaacataaaataaagt 251  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  5045295 taagtgtttatgtataagctat-ttttataacaaaagataaaataaagt 5045248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 13864577 - 13864605
Alignment:
Q  199 tcatataagtgtttatgtataagctattt 227  Q
    |||||||||||||||||||||||||||||    
T  13864577 tcatataagtgtttatgtataagctattt 13864605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 31740061 - 31740029
Alignment:
Q  240 ataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||| ||||||||||||||||||||    
T  31740061 ataaaataaagtcaaactattttcatataagct 31740029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 37292449 - 37292417
Alignment:
Q  240 ataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||| ||||||||||||||||||||    
T  37292449 ataaaataaagtaaaactattttcatataagct 37292417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 43965285 - 43965245
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattt 227  Q
    ||||||| | ||||||||||||||||||| |||||||||||    
T  43965285 cataagcacttatcatataagtgtttatgaataagctattt 43965245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 35135817 - 35135732
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    |||||| || || |||||||||||||||||||||| ||||| | ||||||||  |||||||||||| ||||||||||||||||||||    
T  35135817 cataagtgcttaacatataagtgtttatgtataagatatttct-ataacaaaagataaaataaagtcaaactattttcatataagct 35135732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 32059733 - 32059659
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 272  Q
    ||||||||||||| ||||||||||||| |||||  |||| || |||||||||||| ||||| ||||||||||||||    
T  32059733 tatcatataagtgcttatgtataagctgtttttg-taactaagataaaataaagtcaaactgttttcatataagct 32059659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 32197657 - 32197741
Alignment:
Q  202 tataagtgtttatgtataagctattttttataacaaacataaa-ataaagttaaactattttcatataagctgtttctataagcta 286  Q
    |||||||||||| |||||| |||||| || ||||||| ||  | ||||||| ||||||||||||||||||||||||| ||||||||    
T  32197657 tataagtgtttacgtataaactatttatt-taacaaaaatttatataaagtcaaactattttcatataagctgtttccataagcta 32197741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 20982305 - 20982208
Alignment:
Q  172 attaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataa 269  Q
    |||||||| | ||| |||||| || ||||||||||||| |||||||||||||| ||| |||||||||  |||||||||||| || |  |||||||||||    
T  20982305 attaagtgcttatagcataagtgcttatcatataagtgcttatgtataagcta-tttctataacaaaggataaaataaagtcaacccgttttcatataa 20982208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 26516195 - 26516253
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 227  Q
    ||||||||| | | ||| ||||||||| ||||||||||||| |||||||||||||||||    
T  26516195 ttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctattt 26516253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 11684348 - 11684435
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagcta 286  Q
    ||||||||||||| | |||||||||||| ||||||||||||| ||| || | ||| ||||| |||||||||||||| |||  ||||||||    
T  11684348 tatcatataagtgctaatgtataagcta-tttttataacaaa-atataaaatagtgaaactgttttcatataagctattttcataagcta 11684435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 29014681 - 29014749
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcat 265  Q
    ||||||||||||||| |||||||||||| ||||||| | |||| ||||||| |||| |||||||||||||    
T  29014681 tatcatataagtgttcatgtataagcta-tttttatgataaacgataaaatcaagtcaaactattttcat 29014749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 36539671 - 36539746
Alignment:
Q  197 tatcatataagtgtttatgtataagctattt-tttataacaaacataaaataaagttaaactattttcatataagct 272  Q
    ||||||||||||| |||||| |||||||||| ||||| | ||| |||||||||||| || || ||||||||||||||    
T  36539671 tatcatataagtgcttatgtgtaagctatttgtttatca-aaagataaaataaagtcaacctgttttcatataagct 36539746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 37063217 - 37063146
Alignment:
Q  199 tcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 270  Q
    |||||||| || |||||||||| |||||| | ||||||||  |||||||||||| ||||||||||||||||||    
T  37063217 tcatataaatgcttatgtataaactatttct-ataacaaaagataaaataaagtcaaactattttcatataag 37063146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 41277490 - 41277422
Alignment:
Q  203 ataagtgtttatgtataagctattttttataa-caaacataaaataaagttaaactattttcatataag 270  Q
    ||||||| ||||||| ||||| |||||| ||| |||| |||||||||||| ||||| ||||||||||||    
T  41277490 ataagtgcttatgtaaaagcttttttttgtaatcaaagataaaataaagtcaaactgttttcatataag 41277422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 4991098 - 4991048
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa 238  Q
    ||||||||  |||||||||||||||| |||||||||||| ||||||||||||    
T  4991098 cataagcgattatcatataagtgtttgtgtataagctat-ttttataacaaa 4991048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 7550511 - 7550460
Alignment:
Q  331 attttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 382  Q
    |||| |||||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  7550511 atttccataagctctctcaaagagtctcacaagtaattatgtcagtggataa 7550460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 357
Target Start/End: Original strand, 8090004 - 8090039
Alignment:
Q  322 tcataagttattttcataagctctctcaaatagtct 357  Q
    ||||||||| ||||||||||||||||||||||||||    
T  8090004 tcataagttgttttcataagctctctcaaatagtct 8090039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 11297203 - 11297149
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 371  Q
    ||||||| |||||| ||| |||||||||| ||||| |||||||||||| ||||||    
T  11297203 acatgtcttaagttgtttccataagctctttcaaacagtcttacaagtgtttatg 11297149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 374
Target Start/End: Complemental strand, 12407730 - 12407680
Alignment:
Q  324 ataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 374  Q
    |||||| |||||||||||||||||||||  |||| |||||| |||||||||    
T  12407730 ataagtcattttcataagctctctcaaaccgtctcacaagtgtttatgtca 12407680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 29365544 - 29365609
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttc 263  Q
    ||||||||||||| | |||||||||||| ||||||| | ||| |||| || ||||||||||||||||    
T  29365544 tatcatataagtgctcatgtataagcta-tttttatgataaaaataacatcaagttaaactattttc 29365609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 37611224 - 37611174
Alignment:
Q  315 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagta 365  Q
    |||||||||| ||||| |||||||||||||||||||| | ||| |||||||    
T  37611224 gaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagta 37611174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 37787954 - 37787904
Alignment:
Q  315 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagta 365  Q
    |||||||||| ||||| |||||||||||||||||||| | ||| |||||||    
T  37787954 gaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagta 37787904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 6734037 - 6733966
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataa 269  Q
    ||||||||||||||||||| |||| ||| |||||||||| ||| ||||||||||| |||| | |||||||||||    
T  6734037 tatcatataagtgtttatgcataatcta-tttttataacgaaagataaaataaag-taaattgttttcatataa 6733966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 7096271 - 7096203
Alignment:
Q  198 atcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcata 266  Q
    |||||| ||||| |||||||||||||| ||| |||||| ||| |||||||||||| |||| |||||||||    
T  7096271 atcatacaagtgcttatgtataagcta-tttctataacaaaagataaaataaagtcaaaccattttcata 7096203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 33961600 - 33961668
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa 238  Q
    ||||||||||||| |||  |||||| | |||||||||||||||| |||||||| ||  ||||||||||||    
T  33961600 ttaattaagtgtttatagtataagcacttatcatataagtgtttttgtataaggta-cttttataacaaa 33961668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 40534260 - 40534333
Alignment:
Q  315 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 388  Q
    |||||||||||||| || || |||||||||||  ||| ||| | |||||| ||||||||||| |||||| ||||    
T  40534260 gaacatgtcataagctacttccataagctctcctaaacagtatcacaagtgtttatgtcagtaaataaactcaa 40534333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 4619768 - 4619828
Alignment:
Q  315 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcag 375  Q
    ||||||||||| |||| ||||||||||||||| |||| ||| || |||||  |||||||||    
T  4619768 gaacatgtcattagttgttttcataagctctcccaaacagtgttgcaagtgcttatgtcag 4619828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 6738582 - 6738522
Alignment:
Q  167 gtttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 227  Q
    ||||||||||| ||| ||| ||||| | | ||||||||||||  |||||||||||||||||    
T  6738582 gtttaattaagagtttatagcataaacacttatcatataagtacttatgtataagctattt 6738522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 8158403 - 8158371
Alignment:
Q  240 ataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||||||| ||||||||||||||||    
T  8158403 ataaaataaagttaaattattttcatataagct 8158371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 8571302 - 8571353
Alignment:
Q  203 ataagtgtttatgtataagctattttttataacaaacataaaataaagttaaa 255  Q
    ||||||||||||||||| | |||||| ||||||||| | ||||||||||||||    
T  8571302 ataagtgtttatgtatatgatatttt-tataacaaagaaaaaataaagttaaa 8571353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 10152397 - 10152437
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtct 357  Q
    |||||||||||||| |||||||||||||||  |||||||||    
T  10152397 acatgtcataagttgttttcataagctctccaaaatagtct 10152437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 11406255 - 11406287
Alignment:
Q  315 gaacatgtcataagttattttcataagctctct 347  Q
    |||||| ||||||||||||||||||||||||||    
T  11406255 gaacatatcataagttattttcataagctctct 11406287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 12242716 - 12242672
Alignment:
Q  318 catgtcataagttattttcataagctctctcaaatagtcttacaa 362  Q
    ||||||||||||| ||| |||||||||||||||||| ||| ||||    
T  12242716 catgtcataagttttttccataagctctctcaaataatctcacaa 12242672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 14980572 - 14980612
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtct 357  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  14980572 acatgtcataagtcatttttataagctctctcaaacagtct 14980612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 45107548 - 45107620
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 270  Q
    ||||||||||||| |||| |||||||||||| | |||| ||| |||||||||||| ||||||||||||||||||    
T  45107548 tatcatataagtgcttatctataagctatttct-ataagaaaaataaaataaagtcaaactattttcatataag 45107620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 48830210 - 48830146
Alignment:
Q  208 tgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||||| ||||| |  || |||| |||||||||||| ||||||||||||||||||||    
T  48830210 tgtttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagct 48830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 4034020 - 4033965
Alignment:
Q  321 gtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 376  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| |||||| ||||    
T  4034020 gtcataagttattttcataagctctctcaaacaatctcacaagtgtttatgccagt 4033965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 30815789 - 30815707
Alignment:
Q  189 taagcgcgtatcatataagtg-tttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 270  Q
    ||||||| |||||||||| |  ||||||| |||||| |||| |||||||||  |||||||||||||||||||||||||||||||    
T  30815789 taagcgcttatcatataattactttatgtctaagct-ttttctataacaaaagataaaataaagttaaactattttcatataag 30815707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 1233029 - 1232964
Alignment:
Q  205 aagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataag 270  Q
    ||||||||||| ||||||| ||||| |||||||| ||||||||||||||||| ||||||| ||||||    
T  1233029 aagtgtttatgcataagctgttttt-ataacaaaacataaaataaagttaaattattttcgtataag 1232964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 870962 - 871046
Alignment:
Q  189 taagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctg 273  Q
    ||||||| ||||||||||||| |||||||||| ||| |||||||||| ||| ||||||| |||| ||  | |||||||||||||||    
T  870962 taagcgcttatcatataagtgcttatgtataaacta-tttttataacaaaagataaaattaagtcaattttttttcatataagctg 871046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 16980868 - 16980921
Alignment:
Q  319 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 372  Q
    ||||| |||||| ||| |||||||||||||||||||||| ||||||| ||||||    
T  16980868 atgtcgtaagttgtttccataagctctctcaaatagtctcacaagtacttatgt 16980921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 1730825 - 1730881
Alignment:
Q  205 aagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattt 261  Q
    ||||| ||||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  1730825 aagtgcttatgtataagctatttttttaaccaaagataaaataaagtcaaactattt 1730881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 48282053 - 48282125
Alignment:
Q  192 gcgcgtatcatataagtgtttatgtataagctattt-tttataacaaacataaaataaagttaaactattttc 263  Q
    |||| ||||||||||||| ||||||| ||||||||| | || || ||| |||||||||||| |||||||||||    
T  48282053 gcgcttatcatataagtgcttatgtaaaagctatttctataaaagaaagataaaataaagtcaaactattttc 48282125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 364
Target Start/End: Complemental strand, 49692059 - 49692012
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 364  Q
    |||||||||||| |||||||||||| ||||||||| ||||| ||||||    
T  49692059 acatgtcataagctattttcataagttctctcaaacagtctcacaagt 49692012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 3244829 - 3244883
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 251  Q
    |||||| |||||| ||||||||||||||||| || ||  ||||||||||||||||    
T  3244829 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 3244883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 4200144 - 4200229
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 272  Q
    ||||||| | |||||| ||||||||||| |||||| || |||||||||| ||| |||||||||||| ||  | ||||||||||||||    
T  4200144 cataagcacttatcatctaagtgtttatatataagtta-tttttataacaaaagataaaataaagtcaagttgttttcatataagct 4200229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 4757400 - 4757458
Alignment:
Q  316 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 374  Q
    ||||||||||||||| |||||||||| |||  ||||| |||| |||||| |||||||||    
T  4757400 aacatgtcataagttgttttcataagttctgccaaatggtctcacaagtgtttatgtca 4757458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 362
Target Start/End: Original strand, 6557039 - 6557081
Alignment:
Q  320 tgtcataagttattttcataagctctctcaaatagtcttacaa 362  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||    
T  6557039 tgtcataagctattttcataagttctctcaaatagtctcacaa 6557081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 33339565 - 33339500
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactatttt 262  Q
    ||||||||| |||||||||||||||||| ||| |||| | ||| ||||||| |||||||||||||||    
T  33339565 tatcatataggtgtttatgtataagcta-tttctataccaaaagataaaatgaagttaaactatttt 33339500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 38867838 - 38867783
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 374  Q
    |||| ||||||||||||| |||||||||||||||| ||||  |||||| |||||||||    
T  38867838 acatatcataagttatttccataagctctctcaaacagtc--acaagtgtttatgtca 38867783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 46504387 - 46504322
Alignment:
Q  172 attaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa 238  Q
    |||||||||| ||| ||||||| | |||||||||||||||| | ||||| ||| |||||||||||||    
T  46504387 attaagtgtttatagcataagctcttatcatataagtgtttgtctataaacta-tttttataacaaa 46504322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 52286597 - 52286678
Alignment:
Q  191 agcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    ||||| ||||||||||| | ||||| ||||| ||||| | | ||||||  ||||||||||||||||| |||||||||||||||    
T  52286597 agcgcttatcatataagcgcttatgaataagatatttct-acaacaaaagataaaataaagttaaacaattttcatataagct 52286678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 4256200 - 4256112
Alignment:
Q  185 accataagcgcgtatcat-ataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    |||||||| || |||||| ||| ||||||||||||||||||||| | | ||||||  ||| |||||||||||| ||||||| ||||||||    
T  4256200 accataagtgcttatcatgatacgtgtttatgtataagctatttct-acaacaaaagatacaataaagttaaattattttcgtataagct 4256112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 6262801 - 6262838
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatag 354  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  6262801 acatatcataagttattttcataagctctcccaaatag 6262838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 7707269 - 7707306
Alignment:
Q  333 tttcataagctctctcaaatagtcttacaagtatttat 370  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  7707269 tttcataaactctctcaaataatcttacaagtatttat 7707306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 28467454 - 28467377
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttt-tataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    ||||||| | ||| |||||||||| |||||| | |||||||||  |||||||||||| ||| ||||||||||||||||    
T  28467454 tatcatacaggtgattatgtataacctatttgtgtataacaaaagataaaataaagtcaaattattttcatataagct 28467377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 28467495 - 28467536
Alignment:
Q  316 aacatgtcataagttattttcataagctctctcaaatagtct 357  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||    
T  28467495 aacatgtcataagttatttccataatctctcccaaatagtct 28467536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 34536221 - 34536278
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 374  Q
    |||||||||||| | |||||||||||  ||||||| ||||| |||||| |||||||||    
T  34536221 acatgtcataagctgttttcataagccatctcaaacagtctcacaagtgtttatgtca 34536278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 7357455 - 7357487
Alignment:
Q  203 ataagtgtttatgtataagctattttttataac 235  Q
    ||||| |||||||||||||||||||||||||||    
T  7357455 ataagcgtttatgtataagctattttttataac 7357487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 9656618 - 9656650
Alignment:
Q  240 ataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||||||| ||||||||||||||||    
T  9656618 ataaaataaagttaaattattttcatataagct 9656650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 15360827 - 15360894
Alignment:
Q  205 aagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||||| || ||||| | ||||||||  |||||||||||| ||||| ||||||||||||||    
T  15360827 aagtgtttatgtattagttatttct-ataacaaaagataaaataaagtcaaactgttttcatataagct 15360894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 17420100 - 17420203
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataa-caaacataaaataaagttaaactattttcatat 267  Q
    ||||||||||| | |||  |||||||| || || ||||||  |||||||||| ||| |||||||||  ||| ||||||||||||  ||| ||||||||||    
T  17420100 ttaattaagtgattatagtataagcgcttagcacataagtacttatgtataaacta-tttttataagaaaagataaaataaagtcgaacaattttcatat 17420198  T
Q  268 aagct 272  Q
    |||||    
T  17420199 aagct 17420203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 23895251 - 23895346
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctgtttctataa 282  Q
    ||||||| | ||||||||||||  |||||||||||||| ||| |||||| ||| |||||||||| | ||||| || ||||||| ||| ||| |||||    
T  23895251 cataagcccttatcatataagttattatgtataagcta-tttctataacaaaagataaaataaattcaaactgttctcatatatgctatttttataa 23895346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 1219 - 1145
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagc 271  Q
    ||||||||||||| |||||||||||||| ||| |||||| ||| |||||||||||| |||||||| ||||||||||    
T  1219 tatcatataagtgcttatgtataagcta-tttctataacaaaagataaaataaagtcaaactattctcatataagc 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 2756 - 2830
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagc 271  Q
    ||||||||||||| |||||||||||||| ||| |||||| ||| |||||||||||| |||||||| ||||||||||    
T  2756 tatcatataagtgcttatgtataagcta-tttctataacaaaagataaaataaagtcaaactattctcatataagc 2830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 22684689 - 22684583
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatat 267  Q
    |||||||| || | |||||||| |||| |||||||||| || || ||||||||||| ||| ||||||||||  ||||||||||| ||| | |||||||||    
T  22684689 ttaattaattgcttataccatatgcgcttatcatataaatgcttctgtataagcta-tttctataacaaacggtaaaataaagtcaaattgttttcatat 22684591  T
Q  268 aagctgtt 275  Q
    ||||||||    
T  22684590 aagctgtt 22684583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 270
Target Start/End: Original strand, 54414846 - 54414950
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctat--tttttat-aacaaacataaaataaagttaaactattttcat 265  Q
    ||||||||||||| ||   |||||||| ||||||||||||| |||||||||||||||  ||||||| || ||| | |||||||||| || |||||||| |    
T  54414846 ttaattaagtgtttatgttataagcgcttatcatataagtgcttatgtataagctattatttttataaagaaagagaaaataaagtcaatctattttcct 54414945  T
Q  266 ataag 270  Q
    |||||    
T  54414946 ataag 54414950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 28582054 - 28581988
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttca 264  Q
    ||||||| |||||||||||||||| ||||||||||  | ||| |||||||||||| ||||||||||||    
T  28582054 tatcatagaagtgtttatgtataaactattttttagca-aaagataaaataaagtcaaactattttca 28581988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 8423010 - 8422928
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 251  Q
    ||||||||||||| ||| ||||| |  |||||||||| ||| |||||||||||||||||||   || ||| ||||||||||||    
T  8423010 ttaattaagtgtttatagcataatcatgtatcatatatgtgcttatgtataagctatttttataaaaaaagataaaataaagt 8422928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 376
Target Start/End: Complemental strand, 18628555 - 18628501
Alignment:
Q  322 tcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 376  Q
    ||||||||| ||||||||||||||| |||| ||||| |||||| |||||||||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagt 18628501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 27123359 - 27123305
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 371  Q
    |||||||||||||| ||| |||||||||||||||| ||||| ||||||| |||||    
T  27123359 acatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatg 27123305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 2996636 - 2996693
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 374  Q
    |||||||||||||| |||||||||||||||||||| ||||| | ||||  ||||||||    
T  2996636 acatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtca 2996693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 44319865 - 44319949
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 272  Q
    ||||||| | ||||||||||||| | |||||||| |||||| | |||| ||| ||||||||||||  |||| ||||||||||||||    
T  44319865 cataagcacttatcatataagtgctcatgtataaactatttct-ataaaaaagataaaataaagtcgaactgttttcatataagct 44319949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 437564 - 437504
Alignment:
Q  211 ttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataag 270  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||| | | ||||||||||    
T  437564 ttatgtataagctattttttatagcaaaagataaaataaagttaaattgtgttcatataag 437504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 24193500 - 24193583
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataag 270  Q
    ||||| ||| ||||||||||||  ||||||||||| || |||||| ||| ||| |||||| | ||||||||||||||||||||||    
T  24193500 cataaacgcttatcatataagtacttatgtataagtta-tttttacaacaaaatataaaacagagttaaactattttcatataag 24193583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 356
Target Start/End: Original strand, 27725277 - 27725316
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtc 356  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  27725277 acatgtcataagttatttccataagctctctcaaacagtc 27725316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 33534174 - 33534119
Alignment:
Q  319 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 374  Q
    |||||| || || |||||||||||||||||||||| ||| ||||||| ||||||||    
T  33534174 atgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtca 33534119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 42322018 - 42321952
Alignment:
Q  203 ataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataa 269  Q
    ||||||||||||| ||||||||| ||||||||||||  |||||||||||| ||| | |||||||||||    
T  42322018 ataagtgtttatgaataagctat-ttttataacaaatgataaaataaagtcaaattgttttcatataa 42321952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 54325182 - 54325107
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 272  Q
    ||||||||||||| || ||||||| |||||| |  ||  ||| |||||||||||| ||||| ||||||||||||||    
T  54325182 tatcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagct 54325107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 55437429 - 55437356
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 272  Q
    ||||||||||| | |||| |||||||||||| | |||||||  |||||||||||| ||| ||||||||||||||||    
T  55437429 tatcatataagcgattatctataagctatttct-ataacaat-ataaaataaagtcaaattattttcatataagct 55437356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 32920543 - 32920491
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 251  Q
    ||||||||||||||||||| ||||||||| ||||||||| || ||||||||||||    
T  32920543 tatcatataagtgtttatggataagctat-ttttataac-aagataaaataaagt 32920491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 47970245 - 47970310
Alignment:
Q  199 tcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttca 264  Q
    ||||||||||| |||||||||||||| ||| |||||| ||| ||||||| |||| ||||||||||||    
T  47970245 tcatataagtgcttatgtataagcta-tttctataacaaaagataaaatgaagtcaaactattttca 47970310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 1555017 - 1554968
Alignment:
Q  315 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 364  Q
    |||||||||||||| |||||||||||  ||||||||| |||||| |||||    
T  1555017 gaacatgtcataagctattttcataaattctctcaaacagtcttgcaagt 1554968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 4071811 - 4071882
Alignment:
Q  200 catataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    ||||||||||||||| ||||| |||||| | ||||||||  |||||||||||| ||| ||||||||||||||||    
T  4071811 catataagtgtttatatataa-ctatttct-ataacaaaagataaaataaagtcaaattattttcatataagct 4071882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 269
Target Start/End: Complemental strand, 5219602 - 5219573
Alignment:
Q  240 ataaaataaagttaaactattttcatataa 269  Q
    ||||||||||||||||||||||||||||||    
T  5219602 ataaaataaagttaaactattttcatataa 5219573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 23819015 - 23819087
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 270  Q
    ||||||| ||||||||||||||||| || |||  |||||||| |||||||  ||| ||||| ||||||||||||    
T  23819015 tatcatacaagtgtttatgtataagtta-tttccataacaaatataaaatgtagtcaaactgttttcatataag 23819087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 36734818 - 36734890
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaaca-taaaataaagttaaactattttcatataa 269  Q
    ||||||||||||| |||||||||| || ||| | ||||||||   ||||||||||| |||||||||||||||||    
T  36734818 tatcatataagtgcttatgtataatctctttct-ataacaaaaggtaaaataaagtcaaactattttcatataa 36734890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 49219059 - 49219139
Alignment:
Q  192 gcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    |||| |||||||| |||| ||| ||||||| ||||| | ||||||||  |||||||||||| ||| ||||||||||||||||    
T  49219059 gcgcttatcatatgagtggttaggtataagttatttct-ataacaaaatataaaataaagtcaaattattttcatataagct 49219139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Original strand, 52428733 - 52428766
Alignment:
Q  322 tcataagttattttcataagctctctcaaatagt 355  Q
    ||||||||| ||||||||||||||||||||||||    
T  52428733 tcataagttgttttcataagctctctcaaatagt 52428766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 54986348 - 54986400
Alignment:
Q  198 atcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 251  Q
    ||||||||||| ||||||||||||||| ||| ||||||||| |||| |||||||    
T  54986348 atcatataagtttttatgtataagcta-tttctataacaaaaataagataaagt 54986400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 12162911 - 12162947
Alignment:
Q  230 tataacaaacataaaataaagttaaactattttcata 266  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  12162911 tataacaaacataaaataaagtcaaattattttcata 12162947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 21157693 - 21157768
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataagct 272  Q
    ||||||||||||| |||||||| ||||| |||| ||||||||  ||||| |||||| ||||| ||||||| ||||||    
T  21157693 tatcatataagtgcttatgtatcagcta-ttttgataacaaagtataaactaaagtcaaactgttttcatgtaagct 21157768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 30024597 - 30024700
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatat 267  Q
    ||||||||||||| |||  | |||||  ||||||||||||  ||||| ||||| ||||| | ||||||||  |||||||||||| ||| | |||||||||    
T  30024597 ttaattaagtgtttatagtagaagcgtttatcatataagtacttatgcataagttatttct-ataacaaaagataaaataaagtaaaattgttttcatat 30024695  T
Q  268 aagct 272  Q
    |||||    
T  30024696 aagct 30024700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 32724046 - 32724118
Alignment:
Q  199 tcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagc 271  Q
    |||||| |||| |||||| ||| |||||| |  ||  ||| |||||||||||| |||||||||||||||||||    
T  32724046 tcatatcagtgcttatgtctaatctatttctattacaaaagataaaataaagtcaaactattttcatataagc 32724118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 52645623 - 52645655
Alignment:
Q  195 cgtatcatataagtgtttatgtataagctattt 227  Q
    |||||||||||||||||||||||| ||||||||    
T  52645623 cgtatcatataagtgtttatgtatgagctattt 52645655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 55599063 - 55599115
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataag 221  Q
    |||||||||||   ||| ||||||||||||||| |||||||||||| ||||||    
T  55599063 ttaattaagtgcatatagcataagcgcgtatcacataagtgtttatatataag 55599115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 56007734 - 56007789
Alignment:
Q  308 gacaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 364  Q
    ||||||||| |||||||||||||| ||  || |||||||||||| ||||||||||||    
T  56007734 gacaatcga-catgtcataagttacttgtattagctctctcaaacagtcttacaagt 56007789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 21130675 - 21130733
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcag 375  Q
    |||||||| ||| ||||| |||||||||||||||| ||||| |||||||||||||||||    
T  21130675 acatgtcaaaagctatttccataagctctctcaaacagtctcacaagtatttatgtcag 21130733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 34788581 - 34788497
Alignment:
Q  188 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 272  Q
    |||||||| |||||||||| || ||| |||||||||||||||   | |||| |||||||||||| ||||| ||| ||||||||||    
T  34788581 ataagcgcttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagct 34788497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 2699223 - 2699304
Alignment:
Q  189 taagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 270  Q
    ||||||| ||||||||| |||| ||| |||||| ||||| | | ||||||  |||||||||||||||||||||||||||||||    
T  2699223 taagcgcctatcatatacgtgtctatatataagttatttct-acaacaaaatataaaataaagttaaactattttcatataag 2699304  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 28769494 - 28769409
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    |||||| || |||||||||| || |||||||||||||| ||  |||||||||| ||||||| |||| ||||||||||| ||||||||    
T  28769494 cataagtgcttatcatataaatgcttatgtataagcta-ttcctataacaaactataaaattaagtcaaactattttcttataagct 28769409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 4558730 - 4558794
Alignment:
Q  204 taagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatata 268  Q
    |||||||||||||||||||||||| | |||| |||  |||||||||||||||| ||||||||||||    
T  4558730 taagtgtttatgtataagctatttct-ataataaaagataaaataaagttaaattattttcatata 4558794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 10722556 - 10722629
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 270  Q
    ||||||||||||| || ||||||| ||  ||| ||||||||| |||||||||| | ||| ||||||||||||||    
T  10722556 tatcatataagtgcttgtgtataatcttatttatataacaaagataaaataaactaaaattattttcatataag 10722629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 26215435 - 26215510
Alignment:
Q  211 ttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgtttctataagcta 286  Q
    ||||||||||||||||| | ||||||||  |||||||||||||||||||||||| |||||  |||||  ||||||||    
T  26215435 ttatgtataagctatttct-ataacaaaagataaaataaagttaaactattttcgtataatatgttttcataagcta 26215510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 2595134 - 2595084
Alignment:
Q  204 taagtgtttatgtataagctattttttataacaaacataaaataaagttaaa 255  Q
    |||||||||||||||||| | ||||||||||| || ||||||||||||||||    
T  2595134 taagtgtttatgtataaggttttttttataac-aagataaaataaagttaaa 2595084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 42237547 - 42237492
Alignment:
Q  218 taagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    |||||| ||||||||||||||  |||||||||||||||| | ||||||||||||||    
T  42237547 taagctcttttttataacaaaagataaaataaagttaaattgttttcatataagct 42237492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 9700064 - 9700118
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 371  Q
    ||||||||||| ||  ||||| ||||||||||||||||||| |||||| ||||||    
T  9700064 acatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatg 9700118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 14949929 - 14949983
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 371  Q
    ||||||||||||||||||||||||||||||  ||| ||||| |||| | ||||||    
T  14949929 acatgtcataagttattttcataagctctcctaaacagtctcacaaatgtttatg 14949983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 26717182 - 26717254
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagc 271  Q
    ||||||||||||| || || |||||||| |||| |||||||  |||||||||||| |||||||||||| ||||||    
T  26717182 tatcatataagtgcttctgaataagctaatttt-ataacaag-ataaaataaagtcaaactattttcaaataagc 26717254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 31875732 - 31875674
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 227  Q
    ||||| ||| ||| ||| ||||||||| ||||||||||||| |||| ||||||||||||    
T  31875732 ttaatgaagcgtttatagcataagcgcttatcatataagtgcttatctataagctattt 31875674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 3645986 - 3645886
Alignment:
Q  172 attaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataa-caaacataaaataaagttaaactattttcatataag 270  Q
    ||||| |||| ||| |||||| |  ||||||||||||| || ||||||||||| ||| |||||  ||| |||||| ||| | ||||||||||||||||||    
T  3645986 attaaatgtttatagcataagtgtttatcatataagtgcttgtgtataagcta-tttctataagaaaatataaaacaaaatcaaactattttcatataag 3645888  T
Q  271 ct 272  Q
    ||    
T  3645887 ct 3645886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 11056821 - 11056737
Alignment:
Q  188 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaa-taaagttaaactattttcatataagct 272  Q
    |||||| | ||||||||||||||| ||| || |||||||| | ||||||||   |||| ||||||| |||||||||||||||||||    
T  11056821 ataagctcttatcatataagtgttcatgcatgagctatttct-ataacaaaaggaaaaataaagttgaactattttcatataagct 11056737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 27412884 - 27412851
Alignment:
Q  322 tcataagttattttcataagctctctcaaatagt 355  Q
    ||||||||| ||||||||||||||||||||||||    
T  27412884 tcataagttgttttcataagctctctcaaatagt 27412851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 29263016 - 29262942
Alignment:
Q  199 tcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagctgt 274  Q
    |||||||||||||||| |||  | |||||| ||||| | || |||||||||||| ||| ||||||||||||||||||    
T  29263016 tcatataagtgtttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagctgt 29262942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 30191150 - 30191101
Alignment:
Q  315 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 364  Q
    |||||||||||||||| ||| ||||||||||| |||| ||||| ||||||    
T  30191150 gaacatgtcataagttgtttccataagctctcccaaacagtctaacaagt 30191101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 6918956 - 6918988
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttt 229  Q
    ||||||||||||| |||||||||||||||||||    
T  6918956 tatcatataagtgcttatgtataagctattttt 6918988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 388
Target Start/End: Original strand, 10923674 - 10923730
Alignment:
Q  332 ttttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 388  Q
    ||||||||| ||||||||||| ||||||||||| |||||| || | |||||| ||||    
T  10923674 ttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaa 10923730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 11376765 - 11376825
Alignment:
Q  316 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 376  Q
    ||||||||| ||| |||||||||||| |||| |||||||||| ||||| | |||| |||||    
T  11376765 aacatgtcacaagctattttcataagttctcccaaatagtctcacaagaacttatatcagt 11376825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 11952510 - 11952478
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttt 229  Q
    |||||||||||||||||||||||||| ||||||    
T  11952510 tatcatataagtgtttatgtataagccattttt 11952478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 31915297 - 31915245
Alignment:
Q  320 tgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 372  Q
    ||||||||||| |||  ||||||| ||||||| ||||| ||||||||||||||    
T  31915297 tgtcataagttgtttgtataagctttctcaaacagtctcacaagtatttatgt 31915245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 40357824 - 40357903
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctgttt 276  Q
    |||||||||||| ||||||||||||||  ||  |||||| ||| |||||||||||| ||| |||||||||| | |||||||    
T  40357824 tatcatataagtatttatgtataagct-cttgatataacaaaagataaaataaagtaaaattattttcataaatgctgttt 40357903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 40428471 - 40428555
Alignment:
Q  189 taagcgcgtatcatataagtgtttatgtataagctattttttataac--aaacataaaataaagttaaactattttcatataagct 272  Q
    ||||||| ||| ||||||||| ||||| |||||| ||||| ||||||  ||| |||||||||||||||| ||||||||||||||||    
T  40428471 taagcgcctattatataagtgattatggataagc-attttctataacgaaaaaataaaataaagttaaattattttcatataagct 40428555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 49060465 - 49060540
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||| ||||||||||||||| ||| |||||| ||| |||||||||||| ||| |||||| |||||||||    
T  49060465 tatcatataagtatttatgtataagcta-tttctataacaaaaaataaaataaagtcaaattatttttatataagct 49060540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 3500974 - 3500913
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtctta--caagtatttatgtcagt 376  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||  ||||| |||||||||||    
T  3500974 acatgtcataagttatttccataagctctcacaaatagacttacgcaagtttttatgtcagt 3500913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 382
Target Start/End: Complemental strand, 22387904 - 22387838
Alignment:
Q  316 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 382  Q
    |||||| |||||||| ||||||||||||||| |||| ||||| ||| || ||||||||||| |||||    
T  22387904 aacatgccataagttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaataa 22387838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 31149705 - 31149739
Alignment:
Q  319 atgtcataagttattttcataagctctctcaaata 353  Q
    |||||||||||||||||||||||||||||||||||    
T  31149705 atgtcataagttattttcataagctctctcaaata 31149739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 31167997 - 31168031
Alignment:
Q  319 atgtcataagttattttcataagctctctcaaata 353  Q
    |||||||||||||||||||||||||||||||||||    
T  31167997 atgtcataagttattttcataagctctctcaaata 31168031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 45593864 - 45593791
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataag 270  Q
    |||||||||| || ||||||||||||||||| |  ||||||| ||||||||||||| ||||| ||||||||||||    
T  45593864 tatcatataaatgcttatgtataagctatttctg-taacaaaacataaaataaagtcaaactgttttcatataag 45593791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 272
Target Start/End: Complemental strand, 26935723 - 26935620
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatat 267  Q
    ||||||||| | | |||||||||| |  ||||||||||||| || ||| |||||||| ||||||||||||  ||||||||| |||||| | |||||||||    
T  26935723 ttaattaagcgcttataccataagagattatcatataagtgcttttgtgtaagctat-ttttataacaaatgataaaataaggttaaattgttttcatat 26935625  T
Q  268 aagct 272  Q
     ||||    
T  26935624 gagct 26935620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 27389298 - 27389338
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattt 227  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  27389298 cataagtgcttatcatataagtgtttatgtataagctattt 27389338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 36370595 - 36370669
Alignment:
Q  197 tatcatataagtgttt-atgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 272  Q
    ||||||||| |||||| |||||||||||||||| |||||| || ||||||| |||||||||| |||||| |||||||    
T  36370595 tatcatatatgtgttttatgtataagctattttctataac-aagataaaat-aagttaaactgttttcacataagct 36370669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 44151468 - 44151424
Alignment:
Q  332 ttttcataagctctctcaaatagtcttacaagtatttatgtcagt 376  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||    
T  44151468 ttttcataagctctctcaaataatctcacaagtacttatgtcagt 44151424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 45078218 - 45078265
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaa 245  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  45078218 tatcatataagtgcttatgtataagcta-tttttataacaaaaataaaa 45078265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 47004012 - 47004082
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatat 267  Q
    |||||||||||||||||| | ||||||| ||| |||||||| | |||||||||||| |||||||||| ||||    
T  47004012 tatcatataagtgtttatatgtaagcta-tttctataacaatagataaaataaagtcaaactatttttatat 47004082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 28844383 - 28844441
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 227  Q
    ||||||||||||| ||| ||||||||| |||  |||||||| ||||||||||| |||||    
T  28844383 ttaattaagtgtttatagcataagcgcttattgtataagtgcttatgtataagatattt 28844441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 44808221 - 44808266
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaa 362  Q
    ||||||||||||||||||||||||| ||| ||||| ||||| ||||    
T  44808221 acatgtcataagttattttcataaggtctatcaaacagtctgacaa 44808266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 1431463 - 1431423
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattt 227  Q
    |||||| || ||||||||||||||||||||||||| |||||    
T  1431463 cataagtgcttatcatataagtgtttatgtataagttattt 1431423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 8094368 - 8094416
Alignment:
Q  316 aacatgtcataagttattttcataagctctctcaaatagtcttacaagt 364  Q
    ||||||||||||| | |||||||||  ||||||||||||||| ||||||    
T  8094368 aacatgtcataagctgttttcataaaatctctcaaatagtctcacaagt 8094416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 22759111 - 22759186
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 272  Q
    ||||||||||| |||||||| ||||||| ||| |||||| ||| |||||||||||  ||| | ||||||||||||||    
T  22759111 tatcatataagcgtttatgtttaagcta-tttgtataacaaaagataaaataaaggaaaattgttttcatataagct 22759186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 27481435 - 27481364
Alignment:
Q  201 atataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||||||||||||||| ||| |||||||||  ||||||  |||| ||||| ||| ||||||||||    
T  27481435 atataagtgtttatgtataagcta-tttctataacaaaggataaaacgaagtcaaactgtttccatataagct 27481364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 27518005 - 27517969
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagct 223  Q
    |||||| || |||||||||||||||||||||||||||    
T  27518005 cataagtgcttatcatataagtgtttatgtataagct 27517969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 30496622 - 30496701
Alignment:
Q  190 aagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataa 269  Q
    |||||| ||||| |||||||||||||||||| ||| ||| |||||| ||| |||||||||||| ||| | ||||| |||||    
T  30496622 aagcgcatatcacataagtgtttatgtataaacta-tttctataacaaaatataaaataaagtcaaattgttttcgtataa 30496701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 31341109 - 31341192
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataag 270  Q
    ||||||||| |||||| ||| || |||||||||||||| ||| |||||| ||| |||||||||||| |||||  ||| |||||||    
T  31341109 cataagcgcttatcatctaaatgcttatgtataagcta-tttgtataacaaaagataaaataaagtcaaactggttttatataag 31341192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 35536026 - 35536105
Alignment:
Q  191 agcgcgtatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataag 270  Q
    ||||| ||||||||||  | |||||||||||||| ||| ||||||| || |||||||||||| ||| | ||||||||||||    
T  35536026 agcgcttatcatataaaggcttatgtataagcta-tttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 36537969 - 36538025
Alignment:
Q  315 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 371  Q
    |||||||||||||||| ||| |||||| ||||||||| | ||| |||||| ||||||    
T  36537969 gaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttatg 36538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 39551693 - 39551618
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||| |||| |||||||||| ||| |||||| ||| ||| | |||||| ||||| ||||||||||||||    
T  39551693 tatcatataagtatttaagtataagcta-tttctataacaaaagatatactaaagtaaaactgttttcatataagct 39551618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 40689088 - 40689056
Alignment:
Q  240 ataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||||||| ||||||||||||||||    
T  40689088 ataaaataaagttaaattattttcatataagct 40689056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 2034575 - 2034494
Alignment:
Q  205 aagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagctaa 287  Q
    ||||| ||||||||||||| ||||| | |||||| |||||||||||| |||||| ||||||||||||| |||  |||||||||    
T  2034575 aagtgcttatgtataagctgttttt-acaacaaagataaaataaagtcaaactactttcatataagcttttttcataagctaa 2034494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 7351763 - 7351678
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    ||||||| | |||||||||| || |||||||||| |||||| | |||| |||| |||||||||||||||||| ||||||||||||||    
T  7351763 cataagctcttatcatataaatgcttatgtataaactatttat-ataataaactataaaataaagttaaactgttttcatataagct 7351678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 32513752 - 32513825
Alignment:
Q  199 tcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctg 273  Q
    |||||| |||||||||| ||||| ||||| | |||||||| |||||||||||| ||||||||| |||||||||||    
T  32513752 tcatattagtgtttatgcataagttatttct-ataacaaaaataaaataaagtcaaactatttccatataagctg 32513825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 10452505 - 10452430
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    |||||||| |||| ||||||||||||||||| | ||||||||  |||||||||| | ||||||||||||||||||||    
T  10452505 tatcatatcagtgcttatgtataagctatttct-ataacaaaatataaaataaaatcaaactattttcatataagct 10452430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 364
Target Start/End: Complemental strand, 1669805 - 1669758
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 364  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  1669805 acatgtcataagttgttttcataagctctcccaattagtcttacaagt 1669758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 3217344 - 3217262
Alignment:
Q  188 ataagcgcgtatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataag 270  Q
    |||||||  ||||||||||||| |||||||||||||||||||  ||| | || |||||||||||| ||| ||||||||||||||    
T  3217344 ataagcgattatcatataagtgcttatgtataagctatttttg-taagagaagataaaataaagtcaaattattttcatataag 3217262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 20368189 - 20368142
Alignment:
Q  315 gaacatgtcataagttattttcataagctctctcaaatagtcttacaa 362  Q
    |||||||||||||||| |||||||||| |||| |||||||||||||||    
T  20368189 gaacatgtcataagttgttttcataagttctcccaaatagtcttacaa 20368142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 2460158 - 2460104
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 371  Q
    |||||||||||||| ||| |||||||||||||||| ||||| ||||||| |||||    
T  2460158 acatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatg 2460104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 32975875 - 32975933
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 227  Q
    ||||||||| ||| ||| ||||||||| | ||||||||||||||||||||||| |||||    
T  32975875 ttaattaagcgtttatagcataagcgcttctcatataagtgtttatgtataagttattt 32975933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 1402964 - 1402996
Alignment:
Q  240 ataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||||||||||||||||||||||||    
T  1402964 ataaaataaagttaaactattttcatataagct 1402996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 10032496 - 10032571
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatataagct 272  Q
    |||||||||| ||||||||||||||||| |||||||||||| |  | ||||||||  |||||| |||||||||||||    
T  10032496 tatcatataaatgtttatgtataagcta-tttttataacaataggtgaaataaaggcaaactaatttcatataagct 10032571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 27693448 - 27693392
Alignment:
Q  315 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 371  Q
    |||||||||||||||| ||| |||||  ||||||||||||||| ||||||| |||||    
T  27693448 gaacatgtcataagttgtttccataaattctctcaaatagtctcacaagtacttatg 27693392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 271
Target Start/End: Complemental strand, 9833270 - 9833168
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatat 267  Q
    ||||||||||||| ||| ||||||||  ||||||||||||| || | |||||| || ||| ||| |||| | |||||||||||| ||||| ||||| |||    
T  9833270 ttaattaagtgtttataacataagcgtttatcatataagtgcttctctataagata-tttctattacaataaataaaataaagtcaaactgttttcttat 9833172  T
Q  268 aagc 271  Q
    ||||    
T  9833171 aagc 9833168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 24332858 - 24332924
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaa 254  Q
    ||||||| | |||| |||||||| ||||||||||||||||| || ||| ||| |||||||||||||||    
T  24332858 cataagcacttatcctataagtgattatgtataagctatttctt-taaaaaagataaaataaagttaa 24332924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 32577993 - 32577934
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 376  Q
    |||||||||||||| |||||||||||||||||||| | | |  |||||||||||| ||||    
T  32577993 acatgtcataagttgttttcataagctctctcaaacaatgtcccaagtatttatgccagt 32577934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 22742281 - 22742366
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataagct 272  Q
    ||||||||| |||| |||||||  |||| ||||||||| ||| |||||||||  |||||||||||| ||| | ||||||||||||||    
T  22742281 cataagcgcttatcgtataagttcttatctataagcta-tttgtataacaaaggataaaataaagtcaaattgttttcatataagct 22742366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 30817709 - 30817671
Alignment:
Q  200 catataagtgtttatgtataagctattttttataacaaa 238  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  30817709 catataagtgcttatgtatatgctattttttataacaaa 30817671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 30863309 - 30863363
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 371  Q
    |||||||||||||| ||||||||||||||  |||| ||||| |||||| ||||||    
T  30863309 acatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatg 30863363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 372
Target Start/End: Original strand, 30865547 - 30865601
Alignment:
Q  318 catgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 372  Q
    ||||||||||||||||| |||||||||||| |||  |||| |||||| |||||||    
T  30865547 catgtcataagttatttccataagctctcttaaactgtctaacaagtgtttatgt 30865601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 33068734 - 33068676
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 227  Q
    ||||||||||||| ||| ||||||||| ||||| |||| || ||||||||||| |||||    
T  33068734 ttaattaagtgtttatagcataagcgcttatcaaataaatgcttatgtataagttattt 33068676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 27693581 - 27693507
Alignment:
Q  199 tcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagctgt 274  Q
    |||||||||||||||| |||  | |||||| ||||| | || |||||||||||| ||| ||||||||||||||||||    
T  27693581 tcatataagtgtttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagctgt 27693507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 27857423 - 27857480
Alignment:
Q  319 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 376  Q
    |||||||||||| ||||||||||||||| |||| ||| | |||||| | |||||||||    
T  27857423 atgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagt 27857480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 370
Target Start/End: Original strand, 32917260 - 32917313
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttat 370  Q
    |||||||||||||| ||| ||||||||||| |||| ||||| |||||| |||||    
T  32917260 acatgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttat 32917313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 33911422 - 33911366
Alignment:
Q  201 atataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaact 257  Q
    |||||||||||||||||||| ||| |||||||||| ||| || |||||||||||||||    
T  33911422 atataagtgtttatgtataatcta-tttttataacaaaagatcaaataaagttaaact 33911366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 2027523 - 2027479
Alignment:
Q  226 tttttataacaaac-ataaaataaagttaaactattttcatataa 269  Q
    |||||||||||||  |||||||||||| |||||||||||||||||    
T  2027523 tttttataacaaaagataaaataaagtcaaactattttcatataa 2027479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 8010282 - 8010349
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcat 265  Q
    ||||||||||||| ||| |||||||||| ||| ||||||||  |||||||||||| || ||| ||||||    
T  8010282 tatcatataagtgcttaggtataagcta-tttctataacaacaataaaataaagtcaatctactttcat 8010349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 28660877 - 28660833
Alignment:
Q  226 tttttataacaa-acataaaataaagttaaactattttcatataa 269  Q
    |||||||||||| | |||||||||||||||| |||||||||||||    
T  28660877 tttttataacaatagataaaataaagttaaattattttcatataa 28660833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 31668430 - 31668474
Alignment:
Q  327 agttattttcataagctctctcaaatagtcttacaagtatttatg 371  Q
    |||| ||||||||||||||||| |||||||| |||||| ||||||    
T  31668430 agttgttttcataagctctctctaatagtctcacaagtgtttatg 31668474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 2175857 - 2175809
Alignment:
Q  316 aacatgtcataagttattttcataagctctctcaaatagtcttacaagt 364  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  2175857 aacatgtcataagttgttttcataaactatctcaaatagtcttacaagt 2175809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 25459770 - 25459696
Alignment:
Q  195 cgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 270  Q
    |||||||| |||||| || ||||||| ||||| || |||||||| |||| |||||| |||||||||||||||||||    
T  25459770 cgtatcatgtaagtgcttttgtataaactattgtt-ataacaaagataatataaagataaactattttcatataag 25459696  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 16790501 - 16790432
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcata 266  Q
    ||||||||||||| ||||||||||||||| ||||||||||| | |||||||||| | ||| ||||||||||    
T  16790501 tatcatataagtgcttatgtataagctat-ttttataacaacagataaaataaaatcaaattattttcata 16790432  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 364
Target Start/End: Complemental strand, 25182992 - 25182947
Alignment:
Q  319 atgtcataagttattttcataagctctctcaaatagtcttacaagt 364  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||    
T  25182992 atgtcataagttgttttcataagctctctcaaacagtctcacaagt 25182947  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 25183134 - 25183058
Alignment:
Q  197 tatcatataagtgttta-tgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||  || |||||||||||| |||||||||||| ||||    
T  25183134 tatcatataagtgtttaatgtataaactattttt-ataacaaaagattaaataaagttaagctattttcatatgagct 25183058  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 28843012 - 28842971
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctatttt 228  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  28843012 cataagcgcttatcatataagtgcttatgtataagctatttt 28842971  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 38462206 - 38462277
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatata 268  Q
    |||||||||||||||||| ||||||||| ||| |||| | ||| |||||||||||| ||||| ||||||||||    
T  38462206 tatcatataagtgtttatttataagcta-tttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 49772813 - 49772781
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttt 229  Q
    |||||||||||||||||||||||||||||||||    
T  49772813 tatcatataagtgtttatgtataagctattttt 49772781  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 364
Target Start/End: Original strand, 1810040 - 1810087
Alignment:
Q  317 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 364  Q
    |||||||||||||| ||| | |||||||||||||||||||| ||||||    
T  1810040 acatgtcataagttgtttccgtaagctctctcaaatagtctcacaagt 1810087  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 22232742 - 22232824
Alignment:
Q  188 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 270  Q
    |||||| | |||||||||| || | ||||||||||||||| | ||||||||  |||||||||||| ||||| ||||||||||||    
T  22232742 ataagctcttatcatataaatgctcatgtataagctatttat-ataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 28779274 - 28779356
Alignment:
Q  190 aagcgcgtatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatataagct 272  Q
    |||||| |||||||||| || || |||||||||| ||||| ||||||  | || ||||||||| ||||||||||||||||||||    
T  28779274 aagcgcttatcatataattgcttttgtataagctgttttt-ataacatcagatgaaataaagtcaaactattttcatataagct 28779356  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 32703063 - 32703138
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 272  Q
    |||||||||| |||||||||||||||||||| |  ||  ||| |||||||||| | ||| | ||||||||||||||    
T  32703063 tatcatataaatgtttatgtataagctatttctattataaaagataaaataaactcaaattgttttcatataagct 32703138  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 357
Target Start/End: Complemental strand, 40880954 - 40880915
Alignment:
Q  318 catgtcataagttattttcataagctctctcaaatagtct 357  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  40880954 catgtcataagttgttttcataagctctctcaaacagtct 40880915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 47584523 - 47584570
Alignment:
Q  327 agttattttcataagctctctcaaatagtcttacaagtatttatgtca 374  Q
    |||| |||||||||||||||||||||||||| ||||||  ||||||||    
T  47584523 agttcttttcataagctctctcaaatagtctcacaagtgcttatgtca 47584570  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 50015948 - 50016003
Alignment:
Q  316 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 371  Q
    ||||||||||| ||| |||||||||| ||||||||| ||||| |||||| ||||||    
T  50015948 aacatgtcatacgttcttttcataagttctctcaaacagtctcacaagtgtttatg 50016003  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 12985497 - 12985399
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatata---agtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcat 265  Q
    ||||||||||||| || | |||||||| |||||| ||   |||||||||||||||| | ||| | |||||||| ||||||||||| |||||| |||||||    
T  12985497 ttaattaagtgtttattctataagcgcttatcatgtagtaagtgtttatgtataagttgtttct-ataacaaa-ataaaataaagataaactgttttcat 12985400  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 357
Target Start/End: Original strand, 21574551 - 21574593
Alignment:
Q  315 gaacatgtcataagttattttcataagctctctcaaatagtct 357  Q
    |||||||||||||||| ||||||||||||||| |||| |||||    
T  21574551 gaacatgtcataagttgttttcataagctctcccaaacagtct 21574593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 361
Target Start/End: Original strand, 47132063 - 47132101
Alignment:
Q  323 cataagttattttcataagctctctcaaatagtcttaca 361  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  47132063 cataagttgttttcataagttctctcaaatagtcttaca 47132101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 50004713 - 50004787
Alignment:
Q  315 gaacatgtcataagttattttcataa-gctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 388  Q
    |||||||||||||||| ||| ||||| || |||||||| |||||||||| |  |||||||||| |||||| ||||    
T  50004713 gaacatgtcataagttgtttccataaggccctctcaaacagtcttacaattgcttatgtcagtaaataaactcaa 50004787  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 1395611 - 1395671
Alignment:
Q  212 tatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||||||| | ||||||||  |||||||||||| ||| ||||||||||||||||    
T  1395611 tatgtataagctatttct-ataacaaaagataaaataaagtcaaattattttcatataagct 1395671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 364
Target Start/End: Complemental strand, 14548726 - 14548681
Alignment:
Q  319 atgtcataagttattttcataagctctctcaaatagtcttacaagt 364  Q
    |||||||| ||| |||||||||||||||||||| ||||| ||||||    
T  14548726 atgtcatacgttgttttcataagctctctcaaacagtctcacaagt 14548681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 269
Target Start/End: Complemental strand, 33965665 - 33965564
Alignment:
Q  169 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatat 267  Q
    ||||||||| | | ||| ||||| | |||||  |||| |||||| |||| ||| ||||||||||||| |||  ||||||||||| ||||| |||||||||    
T  33965665 ttaattaagcgcttatagcataaacacgtattgtataggtgtttttgtacaagttattttttataacaaaaggtaaaataaagtcaaactgttttcatat 33965566  T
Q  268 aa 269  Q
    ||    
T  33965565 aa 33965564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 2304280 - 2304224
Alignment:
Q  315 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 371  Q
    ||||||||||||||||  ||||||||  ||||||||||||| | |||||| ||||||    
T  2304280 gaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttatg 2304224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 9279481 - 9279417
Alignment:
Q  187 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 251  Q
    ||||||||| |||||||||||  |||||||||||| ||||||||  || ||| ||| ||||||||    
T  9279481 cataagcgcttatcatataagcatttatgtataagttattttttcgaaaaaagatacaataaagt 9279417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 37689509 - 37689454
Alignment:
Q  217 ataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 272  Q
    ||||||||||||| ||||||||  ||||| |||||||||| ||||||||||||||||    
T  37689509 ataagctattttt-ataacaaaagataaagtaaagttaaattattttcatataagct 37689454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 41028996 - 41028921
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 272  Q
    ||||||||||||| |||||||||||||| ||| |||||| ||| | |||||||||| || || |||||| |||||||    
T  41028996 tatcatataagtgcttatgtataagcta-tttctataacaaaagaaaaaataaagtcaatctgttttcaaataagct 41028921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 42809242 - 42809305
Alignment:
Q  213 atgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgttt 276  Q
    ||||||||||||||| | ||||||||  |||||||| ||||||| | ||||||||||||||||||    
T  42809242 atgtataagctatttct-ataacaaaagataaaatatagttaaattgttttcatataagctgttt 42809305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 43116573 - 43116498
Alignment:
Q  197 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 272  Q
    ||||||| |||||||||||| ||||||| ||| |||||| ||| ||||||| || | |||| |||||||||||||||    
T  43116573 tatcatacaagtgtttatgtgtaagcta-tttctataacaaaagataaaatcaaatcaaacaattttcatataagct 43116498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 44284217 - 44284134
Alignment:
Q  183 ataccataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcata 266  Q
    ||||||||||||  ||||||||||||  | |||||||||||| ||| |||||| ||| |||||| ||||| ||||| ||||||||    
T  44284217 ataccataagcgattatcatataagtactaatgtataagcta-tttctataacaaaaaataaaacaaagtcaaactgttttcata 44284134  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 50211805 - 50211845
Alignment:
Q  324 ataagttattttcataagctctctcaaatagtcttacaagt 364  Q
    ||||||| |||||||||| ||||||||| ||||||||||||    
T  50211805 ataagttgttttcataagttctctcaaacagtcttacaagt 50211845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 6600 - 6568
Alignment:
Q  240 ataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||| ||||||||||||||||||||    
T  6600 ataaaataaagtcaaactattttcatataagct 6568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 13620 - 13588
Alignment:
Q  240 ataaaataaagttaaactattttcatataagct 272  Q
    |||||||||||| ||||||||||||||||||||    
T  13620 ataaaataaagtcaaactattttcatataagct 13588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 286
Target Start/End: Complemental strand, 21409 - 21334
Alignment:
Q  211 ttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgtttctataagcta 286  Q
    ||||||||||||||||||| |||  |||  |||||||||||||||| | ||||| ||||||||||||  ||||||||    
T  21409 ttatgtataagctattttt-ataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagcta 21334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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