View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2784R-Insertion-7 (Length: 365)
Name: NF2784R-Insertion-7
Description: NF2784R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2784R-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 9 - 323
Target Start/End: Complemental strand, 14459515 - 14459209
Alignment:
| Q |
9 |
aaacacgcatagagaggatcacatttttcttataccgtattgatttgtggtaagaaatgcgatcattggttgctctttcacttagcttatcaactaagca |
108 |
Q |
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| T |
14459515 |
aaacacacatagagaggatcacatttttcttataccgtatagatttgtggtaagaaatgcgatccttggttgctctttcacttagcttatcaactaagca |
14459416 |
T |
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| Q |
109 |
actcagaacagaacaaaataaaagactaactgtacaaattatcatcttttaagaaaactggaaaggtattaatttggtccctatcaagtgttagaaaaga |
208 |
Q |
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| T |
14459415 |
actcagaacagaacaaaataaaagactaactgtacagattatcatcttttaagaaaactggaaaggtattaatttggtccctatcaagtgttcgaaaaga |
14459316 |
T |
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| Q |
209 |
ttataacagtaggttataagctccatt-tccggaaacagctagggtacctccagtgtttcattgttatttacttaagaaagctgtaaagtaaagagttga |
307 |
Q |
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| T |
14459315 |
---------taggttataagctccattgtccggaaacagttagggtaccttcagtgtttcattgttatttacttaagaaagctgtaaagtaaagagttga |
14459225 |
T |
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| Q |
308 |
agtcactaacggagga |
323 |
Q |
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| T |
14459224 |
agtcactaacggagga |
14459209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 14459155 - 14459117
Alignment:
| Q |
327 |
acttttcattctcaataatacaccgacatttatattcat |
365 |
Q |
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| T |
14459155 |
acttttcattctcaataatacaccgacatttatattcat |
14459117 |
T |
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