View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2784_high_1 (Length: 696)

Name: NF2784_high_1
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2784_high_1
NF2784_high_1
[»] chr8 (6 HSPs)
chr8 (351-696)||(3235555-3235900)
chr8 (10-287)||(3235964-3236244)
chr8 (479-696)||(3232970-3233178)
chr8 (378-530)||(3233157-3233303)
chr8 (219-252)||(32535489-32535522)
chr8 (224-252)||(20692887-20692915)
[»] chr4 (2 HSPs)
chr4 (225-265)||(19470146-19470186)
chr4 (209-249)||(34257427-34257467)
[»] chr3 (4 HSPs)
chr3 (209-265)||(34881087-34881142)
chr3 (209-265)||(40700599-40700654)
chr3 (224-264)||(46612907-46612947)
chr3 (209-252)||(34881362-34881404)
[»] chr7 (1 HSPs)
chr7 (202-265)||(39734699-39734761)
[»] chr1 (2 HSPs)
chr1 (225-263)||(8098183-8098221)
chr1 (219-263)||(15873798-15873842)
[»] chr2 (3 HSPs)
chr2 (216-265)||(2579084-2579133)
chr2 (216-265)||(37519586-37519635)
chr2 (224-264)||(15997486-15997526)
[»] chr5 (1 HSPs)
chr5 (212-252)||(1410985-1411025)


Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 351 - 696
Target Start/End: Complemental strand, 3235900 - 3235555
Alignment:
Q  351 ccaatggatgattatgctttagtataattgatatttcaaacattattccaacacttgcaacctcaaaaaacaattttttagatatcaagttgtacagatt 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3235900 ccaatggatgattatgctttagtataattgatatttcaaacattattccaacacttgcaacctcaaaaaacaattttttagatatcaagttgtacagatt 3235801  T
Q  451 tttaagtttgtacgagatatacttaataaaagttaaatacattaggatctattgagttatagttaaatacattaggatctgctgactgagggttattatt 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3235800 tttaagtttgtacgagatatacttaataaaagttaaatacattaggatctattgagttatagttaaatacattaggatctgctgactgagggttattatt 3235701  T
Q  551 tagtaaagaagagacacaagaatcccaaacttttgcactccttttcaatattgaagttttgctcttcctaaaatcttctgatgtcaaaatagcttttgtc 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3235700 tagtaaagaagagacacaagaatcccaaacttttgcactccttttcaatattgaagttttgctcttcctaaaatcttctgatgtcaaaatagcttttgtc 3235601  T
Q  651 atgtcatcatgacattgttttcccacttcattcacaaggttaaaac 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3235600 atgtcatcatgacattgttttcccacttcattcacaaggttaaaac 3235555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 10 - 287
Target Start/End: Complemental strand, 3236244 - 3235964
Alignment:
Q  10 attctaattgtttgttgatgtttaaggtggtggattatgttggcgctctattcattcattatgtgaggaatgaggaggagca-gagacggaaaatgaggt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  |  |||||||||||||||||    
T  3236244 attctaattgtttgttgatgtttaaggtggtggattatgttggcgctctattcattcattatgcgaggaatgaggtggttcttgagacggaaaatgaggt 3236145  T
Q  109 at--tatcttatgtcaagtatcgccctgaagtgagatgtctcttaaggcggtgaagggggtaagttgtgctacaccatgttatttattgaggttgcaagt 206  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3236144 atattatcttatgtcaagtatcgccctgaagtgagatgtctcttaaggcggtgaaggaggtaagttgtgctacaccatgttatttattgaggttgcaagt 3236045  T
Q  207 tatggcaaggagaaaatctaacataacaattaacatattaacattttttattgaaaaaacatcctttaaatccatgagatg 287  Q
    | || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  3236044 tttgacaaggagaaaatctaacataacaattaacatattaatattttttattgaaaaaacaccctttaattccatgagatg 3235964  T

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Target: chr8; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 479 - 696
Target Start/End: Complemental strand, 3233178 - 3232970
Alignment:
Q  479 aaagttaaatacattaggatctattgagttatagttaaatacattaggatctgctgactgagggttattatttagtaaagaagagacacaagaatcccaa 578  Q
    |||||||||||||||||||||||||||||||      ||||||| ||||||||||    ||||| ||||   ||||||||||||||||||||||||||||    
T  3233178 aaagttaaatacattaggatctattgagtta------aatacataaggatctgctacaggagggatatt---tagtaaagaagagacacaagaatcccaa 3233088  T
Q  579 acttttgcactccttttcaatattgaagttttgctcttcctaaaatcttctgatgtcaaaatagcttttgtcatgtcatcatgacattgttttcccactt 678  Q
    |||||   |||||||| ||| |||||||||||  ||||| | |||| ||||||||  ||||||  |||||||||||| |||||||||||||||||||| |    
T  3233087 actttccaactcctttccaaaattgaagtttttttcttcttgaaattttctgatgcaaaaatatattttgtcatgtcgtcatgacattgttttcccacct 3232988  T
Q  679 cattcacaaggttaaaac 696  Q
    ||||||||||||||||||    
T  3232987 cattcacaaggttaaaac 3232970  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 530
Target Start/End: Complemental strand, 3233303 - 3233157
Alignment:
Q  378 ttgatatttcaaacattattccaacacttgcaacctcaaaaaa-caattttttagatatcaagttgtacagatttttaagtttgtacgagatatacttaa 476  Q
    |||||||| ||||||| ||||||||||||||| | | |||||| |||||| |||||||||||||||||||   |||||| |||| |||||  |||| |||    
T  3233303 ttgatattccaaacataattccaacacttgcagcataaaaaaaacaatttattagatatcaagttgtacaatcttttaaatttgcacgag--atacctaa 3233206  T
Q  477 taaaagttaaatacattaggatctattgagttatagttaaatacattaggatct 530  Q
    | |||||||||     || |||| | || |||| ||||||||||||||||||||    
T  3233205 ttaaagttaaa-----tatgatcgaatgggttaaagttaaatacattaggatct 3233157  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 32535489 - 32535522
Alignment:
Q  219 aaaatctaacataacaattaacatattaacattt 252  Q
    |||| |||||||||||||||||||||||||||||    
T  32535489 aaaagctaacataacaattaacatattaacattt 32535522  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 20692887 - 20692915
Alignment:
Q  224 ctaacataacaattaacatattaacattt 252  Q
    |||||||||||||||||||||||||||||    
T  20692887 ctaacataacaattaacatattaacattt 20692915  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 19470186 - 19470146
Alignment:
Q  225 taacataacaattaacatattaacattttttattgaaaaaa 265  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  19470186 taacataacaattaacatattaatattttttattaaaaaaa 19470146  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 34257427 - 34257467
Alignment:
Q  209 tggcaaggagaaaatctaacataacaattaacatattaaca 249  Q
    |||||||||||||| ||| |||||||||||||||| |||||    
T  34257427 tggcaaggagaaaaactagcataacaattaacataataaca 34257467  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 34881087 - 34881142
Alignment:
Q  209 tggcaaggagaaaatctaacataacaattaacatattaacattttttattgaaaaaa 265  Q
    |||||||||||||| |||||| |||||||||||||||||||||| | ||| ||||||    
T  34881087 tggcaaggagaaaa-ctaacaaaacaattaacatattaacatttgtcattaaaaaaa 34881142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 40700654 - 40700599
Alignment:
Q  209 tggcaaggagaaaatctaacataacaattaacatattaacattttttattgaaaaaa 265  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| | ||| ||||||    
T  40700654 tggcaagaagaaaat-taacataacaattaacatattaacatttgtgattcaaaaaa 40700599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 46612947 - 46612907
Alignment:
Q  224 ctaacataacaattaacatattaacattttttattgaaaaa 264  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  46612947 ctaacataacaattaacatattaacatttgttattaaaaaa 46612907  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 34881362 - 34881404
Alignment:
Q  209 tggcaaggagaaaatctaacataacaattaacatattaacattt 252  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  34881362 tggcaaggagaaaa-ctaacaaaacaattaacatattaacattt 34881404  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 39734761 - 39734699
Alignment:
Q  202 caagttatggcaaggagaaaatctaacataacaattaacatattaacattttttattgaaaaaa 265  Q
    ||||| ||||||||||||||| ||||||| |||||||||||||| ||||||  |||| ||||||    
T  39734761 caagtcatggcaaggagaaaa-ctaacattacaattaacatattcacatttgctattaaaaaaa 39734699  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 8098221 - 8098183
Alignment:
Q  225 taacataacaattaacatattaacattttttattgaaaa 263  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  8098221 taacataacaattaacatactaacatttattattgaaaa 8098183  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 15873798 - 15873842
Alignment:
Q  219 aaaatctaacataacaattaacatattaacattttttattgaaaa 263  Q
    |||| |||||||||||||||||||| |||||||| ||||| ||||    
T  15873798 aaaaactaacataacaattaacatactaacatttgttattaaaaa 15873842  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 2579084 - 2579133
Alignment:
Q  216 gagaaaatctaacataacaattaacatattaacattttttattgaaaaaa 265  Q
    ||||||| ||||||||||||||| |||| |||||||| | ||||||||||    
T  2579084 gagaaaaactaacataacaattagcatactaacatttatcattgaaaaaa 2579133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 37519586 - 37519635
Alignment:
Q  216 gagaaaatctaacataacaattaacatattaacattttttattgaaaaaa 265  Q
    ||||||| |||||||||||||||||||||||| |||| | ||| ||||||    
T  37519586 gagaaaaactaacataacaattaacatattaatatttgtcatttaaaaaa 37519635  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 15997486 - 15997526
Alignment:
Q  224 ctaacataacaattaacatattaacattttttattgaaaaa 264  Q
    |||||||||||||||||||| |||||||||| ||| |||||    
T  15997486 ctaacataacaattaacatactaacatttttcattaaaaaa 15997526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 1410985 - 1411025
Alignment:
Q  212 caaggagaaaatctaacataacaattaacatattaacattt 252  Q
    |||| |||||| ||||||||| |||||||||||||||||||    
T  1410985 caagaagaaaaactaacataataattaacatattaacattt 1411025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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