View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2784_high_10 (Length: 321)

Name: NF2784_high_10
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2784_high_10
NF2784_high_10
[»] chr1 (8 HSPs)
chr1 (14-320)||(6514366-6514674)
chr1 (40-302)||(6497025-6497296)
chr1 (42-218)||(6510104-6510280)
chr1 (42-200)||(6502468-6502626)
chr1 (46-173)||(6525868-6525995)
chr1 (46-157)||(47775666-47775777)
chr1 (46-157)||(47771514-47771625)
chr1 (262-319)||(6502373-6502430)
[»] scaffold0341 (2 HSPs)
scaffold0341 (42-218)||(4128-4304)
scaffold0341 (42-218)||(11784-11960)
[»] chr5 (1 HSPs)
chr5 (75-150)||(28843788-28843863)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 6514674 - 6514366
Alignment:
Q  14 gagaaattggaaggaggggactgtgt--agtatcatagatccaacattaaacaatgagtcactaaatgagataatgagatgtatccatattggattactt 111  Q
    |||||||||||||||||||||||     | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6514674 gagaaattggaaggaggggactgcagcaaatatcatagatccaacattaaacaatgactcactaaatgagataatgagatgtatccatattggattactt 6514575  T
Q  112 tgtattcaagagaatgtagctagcagaccaaccatggcttctgttgtagtgacgcttaatagcccttctgttactctcccaattcctttgcaacctgcat 211  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6514574 tgtgttcaagagaatgtagctagcagaccaaccatggcttctgttgtagtgacgcttaatagcccttctgttactctcccaattcctttgcaacctgcat 6514475  T
Q  212 ttcatatagggcctcaagatatgaaatcgtcaggtcatagttctgctcaagaatctgtcaatggggcttcaaatacacagctatttcctcgctagctgaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6514474 ttcatatagggcctcaagatatgaaatcgtcaggtcatagttctgctcaagaatcagtcaatggggcttcaaatacacagctatttcctcgctagctgaa 6514375  T
Q  312 attttaata 320  Q
    |||||||||    
T  6514374 attttaata 6514366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 40 - 302
Target Start/End: Complemental strand, 6497296 - 6497025
Alignment:
Q  40 agtatcatagatccaacattaaacaatgagtcactaaatgagataatgagatgtatccatattggattactttgtattcaagagaatgtagctagcagac 139  Q
    |||||||||||||| || ||||||||||| |||| |||||| ||  |||||||||| |||||||||||||||||| |||||||||||||||||||||| |    
T  6497296 agtatcatagatcccacgttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggc 6497197  T
Q  140 caaccatggcttctgttgtagtgacgcttaatagcccttctgttactctcccaattcctttgcaacctgcatttcatat---------agggcctcaaga 230  Q
    ||| ||||||| |||| ||||||| ||| |||||   ||| |||||||||||||| |||||| ||||||||||||||||         |   | ||||||    
T  6497196 caagcatggctactgtagtagtgatgctaaatagtgattcagttactctcccaatgcctttggaacctgcatttcatatggatagcagaaaccttcaaga 6497097  T
Q  231 tatgaaatcgtcaggtcatagttctgctcaagaatctgtcaatggggcttcaaatacacagctatttcctcg 302  Q
    ||||||||| |  ||||||||||| ||||||||||| ||||||||| ||||||||||| |||| | ||||||    
T  6497096 tatgaaatcatggggtcatagttcagctcaagaatcagtcaatgggtcttcaaatacagagctgtatcctcg 6497025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 42 - 218
Target Start/End: Complemental strand, 6510280 - 6510104
Alignment:
Q  42 tatcatagatccaacattaaacaatgagtcactaaatgagataatgagatgtatccatattggattactttgtattcaagagaatgtagctagcagacca 141  Q
    |||||||||| | || ||||||||||| |||| |||||| ||  | |||||||| |||||||||||||||||| |||||||||||||||||||||| |||    
T  6510280 tatcatagattctactttaaacaatgattcacgaaatgaaatttttagatgtattcatattggattactttgtgttcaagagaatgtagctagcaggcca 6510181  T
Q  142 accatggcttctgttgtagtgacgcttaatagcccttctgttactctcccaattcctttgcaacctgcatttcatat 218  Q
    | |||||||||||||||||||| |||||||||   |||||||||||||||||| |||||| ||||||||||||||||    
T  6510180 agcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatat 6510104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 6502626 - 6502468
Alignment:
Q  42 tatcatagatccaacattaaacaatgagtcactaaatgagataatgagatgtatccatattggattactttgtattcaagagaatgtagctagcagacca 141  Q
    |||||||||  | |||||||||||||| |||| |||||| ||| | ||||||||||||||||||||||||||| ||||||||||| |||  |  ||||||    
T  6502626 tatcatagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatatagtaaatagacca 6502527  T
Q  142 accatggcttctgttgtagtgacgcttaatagcccttctgttactctcccaattccttt 200  Q
    |||||||||||| ||||||||| ||||||||||   ||||||||||| ||||| |||||    
T  6502526 accatggcttctattgtagtgatgcttaatagcgactctgttactcttccaatgccttt 6502468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 173
Target Start/End: Original strand, 6525868 - 6525995
Alignment:
Q  46 atagatccaacattaaacaatgagtcactaaatgagataatgagatgtatccatattggattactttgtattcaagagaatgtagctagcagaccaacca 145  Q
    |||||||| |||||||||||||| ||| | || || ||||||||||| ||||| ||||| ||||||||| ||||||| |||| ||||||||| ||||| |    
T  6525868 atagatcccacattaaacaatgattcagtgaacgaaataatgagatgcatccacattgggttactttgtgttcaagaaaatgcagctagcaggccaacta 6525967  T
Q  146 tggcttctgttgtagtgacgcttaatag 173  Q
    |||||||| ||||| | | |||||||||    
T  6525968 tggcttctattgtactaatgcttaatag 6525995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 47775666 - 47775777
Alignment:
Q  46 atagatccaacattaaacaatgagtcactaaatgagataatgagatgtatccatattggattactttgtattcaagagaatgtagctagcagaccaacca 145  Q
    ||||||||| |||||||||||   |||  |||||| ||||||||||||||||||||||  ||||||||| ||||||| ||||||| |  |||||||||||    
T  47775666 atagatccagcattaaacaatatttcagcaaatgaaataatgagatgtatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaacca 47775765  T
Q  146 tggcttctgttg 157  Q
    ||||| ||||||    
T  47775766 tggctgctgttg 47775777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 47771514 - 47771625
Alignment:
Q  46 atagatccaacattaaacaatgagtcactaaatgagataatgagatgtatccatattggattactttgtattcaagagaatgtagctagcagaccaacca 145  Q
    |||||| || |||||||||||   |||  |||||| ||||||||||| ||||||||||| ||||||||| ||||||| ||||||| |  |||||||||||    
T  47771514 atagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattggcttactttgtgttcaagaaaatgtagttgacagaccaacca 47771613  T
Q  146 tggcttctgttg 157  Q
    ||||| ||||||    
T  47771614 tggctactgttg 47771625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 6502430 - 6502373
Alignment:
Q  262 gaatctgtcaatggggcttcaaatacacagctatttcctcgctagctgaaattttaat 319  Q
    ||||| |||||||| |||||||||||| |||  |||||||||||| || |||||||||    
T  6502430 gaatcggtcaatggagcttcaaatacagagccttttcctcgctagttgtaattttaat 6502373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 42 - 218
Target Start/End: Complemental strand, 4304 - 4128
Alignment:
Q  42 tatcatagatccaacattaaacaatgagtcactaaatgagataatgagatgtatccatattggattactttgtattcaagagaatgtagctagcagacca 141  Q
    |||||||||  | |||||||||||||| |||| |||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  4304 tatcatagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggcca 4205  T
Q  142 accatggcttctgttgtagtgacgcttaatagcccttctgttactctcccaattcctttgcaacctgcatttcatat 218  Q
    | |||||||||||||||||||| |||||||||   |||||||||||||||||| |||||| ||||||||||||||||    
T  4204 agcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatat 4128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 42 - 218
Target Start/End: Complemental strand, 11960 - 11784
Alignment:
Q  42 tatcatagatccaacattaaacaatgagtcactaaatgagataatgagatgtatccatattggattactttgtattcaagagaatgtagctagcagacca 141  Q
    |||||||||  | |||||||||||||| |||| |||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  11960 tatcatagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggcca 11861  T
Q  142 accatggcttctgttgtagtgacgcttaatagcccttctgttactctcccaattcctttgcaacctgcatttcatat 218  Q
    | |||||||||||||||||||| |||||||||   |||||||||||||||||| |||||| ||||||||||||||||    
T  11860 agcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatat 11784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 28843863 - 28843788
Alignment:
Q  75 aaatgagataatgagatgtatccatattggattactttgtattcaagagaatgtagctagcagaccaaccatggct 150  Q
    |||||| || |||||||| || |||||||| ||||||||| | ||||| ||||||||||| |||| ||||||||||    
T  28843863 aaatgaaatcatgagatgcattcatattgggttactttgtgtgcaagacaatgtagctagaagacgaaccatggct 28843788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University