View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2784_high_11 (Length: 311)

Name: NF2784_high_11
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2784_high_11
NF2784_high_11
[»] chr1 (1 HSPs)
chr1 (14-311)||(7091988-7092283)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 311
Target Start/End: Complemental strand, 7092283 - 7091988
Alignment:
Q  14 agacgtacataattgtgtcccctccatatagtagtaggggaatcatgtatgtattcataatatagtatagctaccaagaaaatctgacctcttacctaaa 113  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7092283 agacgtacataattgtgtcccctccatatagtagtagtggaatcatgtatgtattcataatatagtatagctaccaagaaaatctgacctcttacctaaa 7092184  T
Q  114 tccaggaggaagaggaaatttcgagaatattatatcctaccatccttttcaatacctaactttttaatatccaaacattttagtagtcaaatctttactt 213  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  7092183 tccaggaggaagaagaaatttcgagaatat--tatcctaccatccttttcaacacctaactttttcatatccaaacattttagtagtcaaatctttactt 7092086  T
Q  214 tagaccatataaaaggaaggaggatnnnnnnnnnnnnnnnnntgctgtaagcttatatgatattccattcgaaaaataacaacatgaaacaacattaa 311  Q
    |||||||||||||||||||||||||                 || |||||| |||||||||||| |||||| ||||||||||||||||||||||||||    
T  7092085 tagaccatataaaaggaaggaggatggggagtagggtgggggtgttgtaagtttatatgatatttcattcggaaaataacaacatgaaacaacattaa 7091988  T

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