View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2784_high_3 (Length: 574)
Name: NF2784_high_3
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2784_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 32 - 496
Target Start/End: Complemental strand, 3238489 - 3238025
Alignment:
| Q |
32 |
aacctgtgcattacctaaagtacaggttgatcgagcatttgtgtctataattctttttataactttgaagattggcgactagagataatcattttaggtg |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238489 |
aacctgtgcattacctaaagtacaggttgatcgagcatttgtgtctataattctttttataactttgaagattggcgactagagataatcattttaggtg |
3238390 |
T |
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| Q |
132 |
gaagaatttattaaatagcggctgcagcggtactatagatagcgaatttgaactaatcgctattgttctgcaatatgttaattagtacaaaatacagcgg |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238389 |
gaagaatttattaaatagcggctgcagcggtactatagatagcgaatttgaactaatcgctattgttctgcaatatgttaattagtacaaaatacagcgg |
3238290 |
T |
|
| Q |
232 |
caatagcgacactatagacctgttgcaaatcgaaatttgaatgagctgctattttccgcgatcggggattgatagacaacatcaaatatgttatattatg |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238289 |
caatagcgacactatagacctgttgcaaatcgaaatttgaatgagctgctattttccgcgatcggggattgatagacaacatcaaatatgttatattatg |
3238190 |
T |
|
| Q |
332 |
attattattctatgtttgatacacatctaataacaaacagatagcgtgtgtatatcacattcaaatgacaacatacctgtttcgaaagaattatagacac |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238189 |
attattattctatgtttgatacacatctaataacaaacagatagcgtgtgtatatcacattcaaatgacaacatacctgtttcgaaagaattatagacac |
3238090 |
T |
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| Q |
432 |
tattttcaaaaagaacctccaatattgttttaaaaagaaaagtttagaaatttatgacaaacact |
496 |
Q |
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| T |
3238089 |
tattttcaaaaagaacctccaatattgttttaaaaagaaaagtttagaaatttatgacaaacact |
3238025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 48198123 - 48198079
Alignment:
| Q |
178 |
tttgaactaatcgctattgttctgcaatatgttaattagtacaaa |
222 |
Q |
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| T |
48198123 |
tttgaactaatcgctattgttctgtgatatgttatttagtacaaa |
48198079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 16169232 - 16169188
Alignment:
| Q |
177 |
atttgaactaatcgctattgttctgcaatatgttaattagtacaa |
221 |
Q |
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| T |
16169232 |
atttgaactaatcgctattgttctgcgatatgctattgagtacaa |
16169188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 20981269 - 20981319
Alignment:
| Q |
175 |
gaatttgaactaatcgctattgttctgcaatatgttaattagtacaaaata |
225 |
Q |
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||||||||||||||| |||||||||||||||| | || |||||| |||||| |
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| T |
20981269 |
gaatttgaactaatcactattgttctgcaatacgctatttagtataaaata |
20981319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 39647189 - 39647140
Alignment:
| Q |
175 |
gaatttgaactaatcgctattgttctgcaatatgttaattagtacaaaat |
224 |
Q |
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|||||||||| ||||| ||||||||||| ||||| || |||||||||||| |
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| T |
39647189 |
gaatttgaacaaatcgttattgttctgcgatatgctatttagtacaaaat |
39647140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 55314496 - 55314542
Alignment:
| Q |
176 |
aatttgaactaatcgctattgttctgcaatatgttaattagtacaaa |
222 |
Q |
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||||||||| ||| ||||||||||||| ||||| ||||||||||||| |
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| T |
55314496 |
aatttgaacaaattgctattgttctgcgatatgctaattagtacaaa |
55314542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 2732936 - 2732984
Alignment:
| Q |
176 |
aatttgaactaatcgctattgttctgcaatatgttaattagtacaaaat |
224 |
Q |
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||||||||| ||||||||||||| ||| ||||| || |||||||||||| |
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| T |
2732936 |
aatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaat |
2732984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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