View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2784_high_4 (Length: 551)

Name: NF2784_high_4
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2784_high_4
NF2784_high_4
[»] chr5 (24 HSPs)
chr5 (161-459)||(10218120-10218419)
chr5 (39-186)||(11049560-11049722)
chr5 (33-122)||(10218450-10218539)
chr5 (458-551)||(10217680-10217773)
chr5 (7-121)||(10610080-10610194)
chr5 (7-120)||(10563397-10563510)
chr5 (145-422)||(10603276-10603551)
chr5 (282-433)||(10664558-10664710)
chr5 (145-425)||(10599611-10599889)
chr5 (296-448)||(10661470-10661623)
chr5 (14-63)||(10718681-10718730)
chr5 (272-344)||(10764622-10764694)
chr5 (377-448)||(10653584-10653655)
chr5 (7-109)||(10742439-10742541)
chr5 (7-120)||(10748741-10748854)
chr5 (139-425)||(10610227-10610511)
chr5 (13-68)||(10764875-10764930)
chr5 (274-425)||(10748423-10748575)
chr5 (295-433)||(7191675-7191814)
chr5 (294-424)||(10557589-10557720)
chr5 (299-419)||(10549467-10549588)
chr5 (137-186)||(10579522-10579571)
chr5 (137-186)||(10590072-10590121)
chr5 (506-550)||(9837263-9837307)
[»] chr6 (9 HSPs)
chr6 (7-120)||(12956448-12956561)
chr6 (13-120)||(12930652-12930759)
chr6 (13-120)||(12947017-12947124)
chr6 (9-67)||(12897937-12897995)
chr6 (377-435)||(12956834-12956892)
chr6 (275-433)||(12905840-12905999)
chr6 (294-432)||(12930948-12931087)
chr6 (14-67)||(12905564-12905617)
chr6 (397-432)||(12947417-12947452)
[»] chr2 (3 HSPs)
chr2 (275-344)||(17924893-17924962)
chr2 (377-433)||(17924803-17924859)
chr2 (7-67)||(17925185-17925245)
[»] chr3 (1 HSPs)
chr3 (137-186)||(31468804-31468853)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 161 - 459
Target Start/End: Complemental strand, 10218419 - 10218120
Alignment:
Q  161 ccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttccaactctaggatggctaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218419 ccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttccaactctaggatggctaa 10218320  T
Q  261 aagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgca 359  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  10218319 atgatctactattgctaagtttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgca 10218220  T
Q  360 agtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttattgagctatatgttgagtataatcag 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10218219 agtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttattgagctatatgttgggtataatcag 10218120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 11049722 - 11049560
Alignment:
Q  39 cttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtt---------------tct 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||    
T  11049722 cttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtttcatgccttccccaatct 11049623  T
Q  124 ccaattttgtgcgattgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 186  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11049622 ccaattttgtgcgattgggggaaatcaattctcaggaccaatccccacttccataacaaatgc 11049560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 10218539 - 10218450
Alignment:
Q  33 ttccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtttc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218539 ttccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtttc 10218450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 458 - 551
Target Start/End: Complemental strand, 10217773 - 10217680
Alignment:
Q  458 agttgtcacagaactttttgagcagtagcttgccaagagaacttggcatgctaaaaaatattggtaagctagatgtttctgaaaataatctgtt 551  Q
    |||||||||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10217773 agttgtcacataattttttgagcggtagcttgccaagagaagttggcatgctaaaaaatattggtaagctagatgtttctgaaaataatctgtt 10217680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 10610080 - 10610194
Alignment:
Q  7 gggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctctt 106  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||| ||||||| |||||||  ||| ||||||| |||    
T  10610080 gggtgtaaactatttgtctggtatgattccttcttgtctttacaatatctcagcacttactgaactctcactaaccatgaatagatttaatggctcactt 10610179  T
Q  107 ccacccaacatgttt 121  Q
    |||||||||||||||    
T  10610180 ccacccaacatgttt 10610194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 10563397 - 10563510
Alignment:
Q  7 gggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctctt 106  Q
    ||||| |||||| |||||||||||||||||| ||||| |||||||||| |||||||| ||||||||| |||||   ||||||||||||  ||||| ||||    
T  10563397 gggtgagaacaaattgtctggtatgattcctccttgtatttacaatatgtcatcactaattgagctctcactagtcatgaataactttactggctatctt 10563496  T
Q  107 ccacccaacatgtt 120  Q
    ||| ||||||||||    
T  10563497 ccatccaacatgtt 10563510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 145 - 422
Target Start/End: Original strand, 10603276 - 10603551
Alignment:
Q  145 aaatcaattctcaggtccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttcca 244  Q
    ||||||||||| |||||||||||||||||| ||  | ||||| || |||    | ||| |||||||  | ||| | ||| ||||||||||||||||||||    
T  10603276 aaatcaattcttaggtccaatccccacttcaatttcgaatgcttcttctt---tgacattatttgaaattggtgacaaccattttgttggacaagttcca 10603372  T
Q  245 actctaggatggctaaaagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-a 343  Q
    | ||||||   ||||||||||||    |||||||||||||||   |||  |||||||||||| |||||||  |||||||||||||||||||| ||||| |    
T  10603373 agtctagggaagctaaaagatctttatttgctaaatttggaaatgaacattttaggtgacaactcaacaattgatttggagtttttaaaatcattgacaa 10603472  T
Q  344 attatactaagttgcaagtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatc 422  Q
    | | || ||||||||||   || ||| ||| |||||| ||||||||||| |  |||| |||||  ||||| ||||||||    
T  10603473 actgtagtaagttgcaatcactatctttaaccaataataattttggaggtagtttgcaaaattctataggaaatttatc 10603551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 282 - 433
Target Start/End: Complemental strand, 10664710 - 10664558
Alignment:
Q  282 tggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataa 380  Q
    |||||| ||||  |||||||||||| ||||| |||||||||||||| ||||| || ||||| |||| || ||   | |||||| ||||||||  ||||||    
T  10664710 tggaattcaacagtttaggtgacaactcaactaaggatttggagttcttaaagtccttgacgaattgtagtagactacaagtgatttctatatgcaataa 10664611  T
Q  381 caattttggaggcaacttgccaaatttcataggcaatttatccactgaactta 433  Q
     |||||||||| ||| ||| |||||||| ||||||||||||||| | ||||||    
T  10664610 taattttggagccaaattgacaaatttcgtaggcaatttatccaatcaactta 10664558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 145 - 425
Target Start/End: Original strand, 10599611 - 10599889
Alignment:
Q  145 aaatcaattctcaggtccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttcca 244  Q
    |||| ||||||||||||||||||| ||||| ||  ||||||| || |||    | ||| |||||||  ||||| | ||| ||||||||||||||||||||    
T  10599611 aaataaattctcaggtccaatccctacttcaatttcaaatgcttcttctt---tgacattatttgaaatcggtgacaaccattttgttggacaagttcca 10599707  T
Q  245 actctaggatggctaaaagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-a 343  Q
    | ||||||   ||||||||||||    |||||||||||||||   |||  |||||||||||  ||||||| ||||||| ||||||| || || ||||| |    
T  10599708 agtctagggaagctaaaagatctttatttgctaaatttggaaatgaacattttaggtgacagctcaacaatggatttgcagtttttgaagtcattgacaa 10599807  T
Q  344 attatactaagttgcaagtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccac 425  Q
    | | || ||||||||||  ||| ||| ||| | |||| ||||||||||| |  |||| |||||  || || |||||||||||    
T  10599808 actgtagtaagttgcaatcgctatctttaacctataataattttggaggtagtttgcaaaattctattggaaatttatccac 10599889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 296 - 448
Target Start/End: Complemental strand, 10661623 - 10661470
Alignment:
Q  296 ttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaattat-actaagttgcaagtgctttctataaacaataacaattttggaggca 394  Q
    ||||||||||||||||| ||||||||||||||||| ||| | |||||||   | |||||  |   |||| ||||||||  || |||  ||||||| || |    
T  10661623 ttaggtgacaattcaactaaggatttggagtttttgaaaaccttgacaaacttcactaaactaagagtgatttctatatccagtaatcattttgggggta 10661524  T
Q  395 acttgccaaatttcataggcaatttatccactgaacttattgagctatatgttg 448  Q
    |||||||||||||  ||||||||||||||||| |||||| | ||||||||||||    
T  10661523 acttgccaaattttgtaggcaatttatccactcaacttagtcagctatatgttg 10661470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 10718730 - 10718681
Alignment:
Q  14 aacaatttgtctggtatgattccttcttgtttttacaatatctcatcact 63  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10718730 aacaatttgtctggtataattccttcttgtttttacaatatctcatcact 10718681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 10764694 - 10764622
Alignment:
Q  272 ttgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaa 344  Q
    ||||||||||||||| | ||| |||||||||||||||| |||| |||||| ||||||||||||| ||||||||    
T  10764694 ttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaaaatatttgacaa 10764622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 377 - 448
Target Start/End: Complemental strand, 10653655 - 10653584
Alignment:
Q  377 ataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttattgagctatatgttg 448  Q
    |||| ||||||||||| ||||||||||||||  ||||||||||||||||| |||||| | ||||||||||||    
T  10653655 ataataattttggaggtaacttgccaaattttgtaggcaatttatccactcaacttagtcagctatatgttg 10653584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 10742541 - 10742439
Alignment:
Q  7 gggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctctt 106  Q
    |||||| ||| |||||||||||||| ||||||||||| |||||||||| |||| ||| | ||||||  |||||   |||||||||||  |||||||||||    
T  10742541 gggtgtaaactatttgtctggtatggttccttcttgtatttacaatatgtcattactgactgagctttcactagtcatgaataacttcaatggctctctt 10742442  T
Q  107 cca 109  Q
    |||    
T  10742441 cca 10742439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 10748854 - 10748741
Alignment:
Q  7 gggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctctt 106  Q
    ||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||| | | | ||| |||||||    ||||| |||  ||||||||||    
T  10748854 gggtgagaacaatttgtctggtatgtttccttcttgtctttataatatctcatcactaactcaactctcactaaccgaaaataaatttattggctctctt 10748755  T
Q  107 ccacccaacatgtt 120  Q
    ||| ||||| ||||    
T  10748754 ccatccaacttgtt 10748741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 425
Target Start/End: Original strand, 10610227 - 10610511
Alignment:
Q  139 tgggggaaatcaattctcaggtccaatccccacttccataacaaatgcatcatctcccattacaa-tatttgatctcggtcaaaactattttgttggaca 237  Q
    ||| ||||||||||||||||||||||||||   ||||||  ||||||| || || |    ||||| || ||||| | ||||||||| |||| ||||||||    
T  10610227 tggaggaaatcaattctcaggtccaatccctgtttccattgcaaatgcttcttccc----tacaaataattgatttaggtcaaaacaatttggttggaca 10610322  T
Q  238 agttccaactctaggatggctaaaagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatct 337  Q
    |||||||| |||||    | ||  ||||||    | ||| | |||||||||||||||||| ||| |||||||||| |  ||||| ||||||||||||| |    
T  10610323 agttccaagtctagagaagttaccagatctttactggctgagtttggaatacaactatttcggtaacaattcaactatagatttagagtttttaaaatat 10610422  T
Q  338 ttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccac 425  Q
    ||||| || | || |||  |  ||  ||||||||||   ||||| || |||||||| |  |||||||||||||| ||||||||||||||    
T  10610423 ttgacaaactgtagtaaactagaaaagctttctatatctaataataagtttggaggtagtttgccaaatttcattggcaatttatccac 10610511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 10764930 - 10764875
Alignment:
Q  13 gaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattg 68  Q
    ||||||||||||||||| |||||| |||||| |||| |||||||||||||||||||    
T  10764930 gaacaatttgtctggtaagattccatcttgtctttataatatctcatcacttattg 10764875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 425
Target Start/End: Complemental strand, 10748575 - 10748423
Alignment:
Q  274 gctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctata 372  Q
    ||||||||||||| |||||||||| ||| |||||||||| |  ||||| ||||||||||| | |||||| |||| || |||  |  ||||| ||||||||    
T  10748575 gctaaatttggaagacaactatttcggtaacaattcaactatcgatttagagtttttaaagtatttgacaaattgtagtaaactagaagtggtttctata 10748476  T
Q  373 aacaataacaattttggaggcaacttgccaaatttcataggcaatttatccac 425  Q
       ||||| || |||||||| |  |||||||||| ||| |||| |||||||||    
T  10748475 tgtaataataagtttggaggtagtttgccaaattccattggcagtttatccac 10748423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 295 - 433
Target Start/End: Original strand, 7191675 - 7191814
Alignment:
Q  295 tttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggaggc 393  Q
    ||||||| ||||||| || |||||||| |||||||||||||| ||||| || | || |||  | | |||| ||||||||  |  ||| |||||||||||     
T  7191675 tttaggtaacaattccactaaggatttagagtttttaaaatccttgacaaactgtagtaaactactagtgttttctatatcctttaataattttggaggt 7191774  T
Q  394 aacttgccaaatttcataggcaatttatccactgaactta 433  Q
    || |||||||||| ||| || |||||||||||| ||||||    
T  7191775 aatttgccaaattccattgggaatttatccactcaactta 7191814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 424
Target Start/End: Original strand, 10557589 - 10557720
Alignment:
Q  294 atttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggagg 392  Q
    |||| ||||| |||||||| |||||||||   ||||||||||| ||||| || | || |||||||||||||  |||||||  | |||| |||||||||||    
T  10557589 attttggtgaaaattcaactaaggatttgatttttttaaaatcattgactaactgtagtaagttgcaagtgtgttctatatcccataataattttggagg 10557688  T
Q  393 caacttgccaaatttcataggcaatttatcca 424  Q
     |  |||||||||||   ||||||||||||||    
T  10557689 tagtttgccaaatttggcaggcaatttatcca 10557720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 299 - 419
Target Start/End: Original strand, 10549467 - 10549588
Alignment:
Q  299 ggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggaggcaact 397  Q
    |||||||||||||| |||||||| || ||||||||| | ||||| |||| || ||| |||||||   ||||||||  | |||| ||||||||||| |  |    
T  10549467 ggtgacaattcaactaaggatttagaatttttaaaaccattgacaaattgtagtaatttgcaagcattttctatatcccataataattttggaggtagtt 10549566  T
Q  398 tgccaaatttcataggcaattt 419  Q
    |||||| ||||||||| |||||    
T  10549567 tgccaagtttcataggtaattt 10549588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 10579522 - 10579571
Alignment:
Q  137 attgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 186  Q
    ||||| |||||||||||||| ||||||||||| ||||||||  |||||||    
T  10579522 attggaggaaatcaattctctggtccaatcccaacttccattgcaaatgc 10579571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 10590121 - 10590072
Alignment:
Q  137 attgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 186  Q
    ||||| |||||||||||||| ||||||||||| ||||||||  |||||||    
T  10590121 attggaggaaatcaattctctggtccaatcccaacttccattgcaaatgc 10590072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 550
Target Start/End: Complemental strand, 9837307 - 9837263
Alignment:
Q  506 tgctaaaaaatattggtaagctagatgtttctgaaaataatctgt 550  Q
    ||||||||||||||  |||||||||||| ||||||||| ||||||    
T  9837307 tgctaaaaaatattcataagctagatgtctctgaaaatcatctgt 9837263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 12956448 - 12956561
Alignment:
Q  7 gggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctctt 106  Q
    ||||| |||||||||||| |||| ||||||||||||| |||| |||||||||||||||||||  ||  |  |||||   |||||| || |||||||| ||    
T  12956448 gggtgagaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattgcccttgcggtaacacaaaataaccttcatggctctttt 12956547  T
Q  107 ccacccaacatgtt 120  Q
    ||||||||||||||    
T  12956548 ccacccaacatgtt 12956561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 12930652 - 12930759
Alignment:
Q  13 gaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccaccc 112  Q
    |||||||||||| |||| ||||||||||||| |||| ||||||||||||||||||   || ||  |||||  |||| || || |||||||| ||||||||    
T  12930652 gaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttatttcccttacggtaacacagaatcaccttcatggctcttttccaccc 12930751  T
Q  113 aacatgtt 120  Q
    ||||||||    
T  12930752 aacatgtt 12930759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 12947017 - 12947124
Alignment:
Q  13 gaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccaccc 112  Q
    |||||||||||| |||| ||||||||||||| |||| |||||||||||||||||||  ||  |  ||||| ||||| || || |||||||| || |||||    
T  12947017 gaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattgtcctttcggtaacactgaatcaccttcatggctcttttgcaccc 12947116  T
Q  113 aacatgtt 120  Q
    ||||||||    
T  12947117 aacatgtt 12947124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 12897937 - 12897995
Alignment:
Q  9 gtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttatt 67  Q
    |||| ||||||||||| |||| ||||||||||||| |||| ||||||||||||||||||    
T  12897937 gtgtcaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttatt 12897995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 377 - 435
Target Start/End: Original strand, 12956834 - 12956892
Alignment:
Q  377 ataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttatt 435  Q
    |||| |||||||||||| | |||||||||| |||||| |||||||||||||||||||||    
T  12956834 ataataattttggaggccatttgccaaattccatagggaatttatccactgaacttatt 12956892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 275 - 433
Target Start/End: Original strand, 12905840 - 12905999
Alignment:
Q  275 ctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataa 373  Q
    |||| ||||| || |||| |||||||| ||| |||||| |||||||| ||||||||||||| |||||| ||||  | |||  |  | |||||||| |||     
T  12905840 ctaagtttgggattcaacaatttaggtaacatttcaactaaggatttagagtttttaaaatatttgacaaattgcagtaaactatacgtgctttcaatag 12905939  T
Q  374 acaataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaactta 433  Q
    |   ||| |||||||||||  | |||||||||| ||||||||| || |||||||||||||    
T  12905940 attctaataattttggaggacatttgccaaattccataggcaacttttccactgaactta 12905999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 432
Target Start/End: Original strand, 12930948 - 12931087
Alignment:
Q  294 atttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaa-ttatactaagttgcaagtgctttctataaacaataacaattttggagg 392  Q
    |||||||| |||||||||| | |||||| ||||||||||||| |||||||| ||  | |||  |  | |||||||| |||    |||| |||||||||||    
T  12930948 atttaggtaacaattcaactatggatttagagtttttaaaatatttgacaaattgcagtaaactatacgtgctttcgatatcttataataattttggagg 12931047  T
Q  393 caacttgccaaatttcataggcaatttatccactgaactt 432  Q
      | |||||||||| ||||||||||||||| |||||||||    
T  12931048 tcatttgccaaattccataggcaatttatcgactgaactt 12931087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 12905564 - 12905617
Alignment:
Q  14 aacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttatt 67  Q
    ||||||||||| |||| ||| ||||||||| |||| ||||||||||||||||||    
T  12905564 aacaatttgtccggtaagataccttcttgtctttataatatctcatcacttatt 12905617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 432
Target Start/End: Original strand, 12947417 - 12947452
Alignment:
Q  397 ttgccaaatttcataggcaatttatccactgaactt 432  Q
    |||||||||| |||||||||||||||||||||||||    
T  12947417 ttgccaaattccataggcaatttatccactgaactt 12947452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 17924962 - 17924893
Alignment:
Q  275 ctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaa 344  Q
    |||||||||||| | ||| |||||||||| |||||||| | |||||| ||||||||||||| ||||||||    
T  17924962 ctaaatttggaagaaaacaatttaggtgataattcaactatggatttagagtttttaaaatatttgacaa 17924893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 433
Target Start/End: Complemental strand, 17924859 - 17924803
Alignment:
Q  377 ataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaactta 433  Q
    |||| |||||||||||  | |||||||||| |||||| |||||||||||||||||||    
T  17924859 ataataattttggaggtcatttgccaaattccatagggaatttatccactgaactta 17924803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 17925245 - 17925185
Alignment:
Q  7 gggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttatt 67  Q
    ||||| ||||||||| || |||| |||||| |||||| |||| || |||||||||||||||    
T  17925245 gggtgagaacaatttttccggtaagattccatcttgtctttataacatctcatcacttatt 17925185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 31468853 - 31468804
Alignment:
Q  137 attgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 186  Q
    ||||| || ||||||||||||||||||||||| ||||||||| |||||||    
T  31468853 attggtgggaatcaattctcaggtccaatcccaacttccatatcaaatgc 31468804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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