View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2784_high_5 (Length: 438)

Name: NF2784_high_5
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2784_high_5
NF2784_high_5
[»] chr6 (17 HSPs)
chr6 (1-277)||(33645070-33645346)
chr6 (3-87)||(33285002-33285085)
chr6 (1-120)||(33261975-33262095)
chr6 (1-87)||(33387565-33387650)
chr6 (1-83)||(33407777-33407858)
chr6 (1-87)||(33409377-33409462)
chr6 (1-82)||(28870693-28870772)
chr6 (1-58)||(33396851-33396908)
chr6 (1-87)||(33271233-33271318)
chr6 (1-87)||(33398465-33398550)
chr6 (2-65)||(33358345-33358407)
chr6 (3-148)||(33056908-33057051)
chr6 (6-51)||(9166189-9166234)
chr6 (1-58)||(33303917-33303974)
chr6 (234-276)||(33056858-33056900)
chr6 (366-420)||(33648495-33648549)
chr6 (4-58)||(33281153-33281207)
[»] chr2 (2 HSPs)
chr2 (1-64)||(17441419-17441482)
chr2 (9-83)||(17446954-17447027)
[»] scaffold1408 (1 HSPs)
scaffold1408 (1-120)||(2-122)
[»] scaffold0428 (2 HSPs)
scaffold0428 (1-120)||(5748-5868)
scaffold0428 (4-58)||(13045-13099)
[»] chr4 (2 HSPs)
chr4 (9-75)||(31499587-31499652)
chr4 (1-65)||(31479571-31479635)


Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 33645070 - 33645346
Alignment:
Q  1 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaaggtttgggtatgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33645070 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaaggtttgggtatgaa 33645169  T
Q  101 gatgaggcagaaccacaaccgcagccataaccacttcacagataagaaggtaatgaagagtctcaacaaattgaacaagaatcatctatctgttgccacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33645170 gatgaggcagaaccacaaccgcagccataaccacttcacagataagaaggtaatgaagagtctcaacaaattgaacaagaatcatctatctgttgccacc 33645269  T
Q  201 tactcattggttgtcatcaacctgcaaaatacaaacatattttcatgggtatatgttctgcttcataccatgaagtg 277  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33645270 tactcattgtttgtcatcaacctgcaaaatacaaacatattttcatgggtatatgttctgcttcataccatgaagtg 33645346  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 33285085 - 33285002
Alignment:
Q  3 tatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaag 87  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||||||||    
T  33285085 tatcgttgggtatgtaaacaagacctacaagagttcaatttaacaatgatgaatcac-aaaatatccttggctccgaagtgtaag 33285002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 33262095 - 33261975
Alignment:
Q  1 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaaggtttgggta--tg 98  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  |||| |||||| ||| |||| |||||| ||| || |  ||    
T  33262095 ggtatcattgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaatcatgaaaa-atccttggcttcgaaatgtaagattttggcaattg 33261997  T
Q  99 aagatgaggcagaaccacaacc 120  Q
    |||||||| || ||||||||||    
T  33261996 aagatgagacacaaccacaacc 33261975  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33387650 - 33387565
Alignment:
Q  1 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaag 87  Q
    |||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||| ||||| ||||| |||||||||||||||    
T  33387650 ggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaat-tccttggctccgaagtgtaag 33387565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33407858 - 33407777
Alignment:
Q  1 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtg 83  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||| ||||||    
T  33407858 ggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatcacgaaaat-tccttggctcagaagtg 33407777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33409462 - 33409377
Alignment:
Q  1 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaag 87  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||  ||||| ||||| |||| ||||||||||    
T  33409462 ggtatcgttgggtatgtaaacaagacctacaaaagttcaacttcacaatgatgaatcatgaaaat-tccttggctcagaagtgtaag 33409377  T

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Target: chr6; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 28870693 - 28870772
Alignment:
Q  1 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagt 82  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||| |||||    
T  28870693 ggtatcgttgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaa-cacaaaaat-tccttggctcagaagt 28870772  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 33396908 - 33396851
Alignment:
Q  1 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatca 58  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33396908 ggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatca 33396851  T

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Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33271318 - 33271233
Alignment:
Q  1 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaag 87  Q
    ||||||||||| |||||||||||||||||||| |||||||  |||||||| |||||||| ||||| ||||| ||||| || ||||||    
T  33271318 ggtatcgttggatatgtaaacaagacctacaagagttcaatataacaatgctgaatcacgaaaat-tccttggctccaaaatgtaag 33271233  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33398550 - 33398465
Alignment:
Q  1 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaag 87  Q
    |||||||||||||||||||||||||||||| | |||| ||||| ||||||||||||||  ||||| ||||| ||||  |||||||||    
T  33398550 ggtatcgttgggtatgtaaacaagacctacgaaagttgaacttcacaatgatgaatcatgaaaat-tcctttgctcaaaagtgtaag 33398465  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 33358407 - 33358345
Alignment:
Q  2 gtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaat 65  Q
    |||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||| |||||    
T  33358407 gtatcgttgggttt-taaacaagacctacaagagttcaacttcacaatgatgaatcacgaaaat 33358345  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 33057051 - 33056908
Alignment:
Q  3 tatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaaggtttgggta--tgaa 100  Q
    |||||||||||||||||||||||  ||||| | ||||| ||||   | ||||||||||||||| |||||| |||| ||||| ||  ||| |  |  ||||    
T  33057051 tatcgttgggtatgtaaacaagatatacaagaattcaatttaa---tcatgaatcacaaaaat-tccttaactccaaagtgcaaaattttgacaattgaa 33056956  T
Q  101 gatgaggcagaaccacaaccgcagccataaccacttcacagataagaa 148  Q
    |||||| || ||||| ||||||| ||||||| ||||||||||||||||    
T  33056955 gatgagacacaaccagaaccgcaaccataactacttcacagataagaa 33056908  T

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Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 9166234 - 9166189
Alignment:
Q  6 cgttgggtatgtaaacaagacctacaatagttcaacttaacaatga 51  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  9166234 cgttgggtatgtaaacaagacctacaagagttcaacttaacgatga 9166189  T

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Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 33303974 - 33303917
Alignment:
Q  1 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatca 58  Q
    ||||||| |||||||||||| ||||||| ||| | |||||||||||||||||||||||    
T  33303974 ggtatcggtgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatca 33303917  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 33056900 - 33056858
Alignment:
Q  234 aacatattttcatgggtatatgttctgcttcataccatgaagt 276  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  33056900 aacatattttcatgggtgtatgttctgtttcataccatgaagt 33056858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 33648495 - 33648549
Alignment:
Q  366 gtatgatttggtcatttactaaaaagtgacatttccataattcctcaaattccta 420  Q
    ||||||||||||||| ||| ||||||||||||||||| | ||||||| |||||||    
T  33648495 gtatgatttggtcatgtaccaaaaagtgacatttccacacttcctcagattccta 33648549  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 33281207 - 33281153
Alignment:
Q  4 atcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatca 58  Q
    |||||||  |||||||||||||||||||| ||||||  |||||||| ||||||||    
T  33281207 atcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaatca 33281153  T

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Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17441419 - 17441482
Alignment:
Q  1 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaa 64  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  17441419 ggtatcgttgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaatcacgaaaa 17441482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 17446954 - 17447027
Alignment:
Q  9 tgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtg 83  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||| |||| ||||||    
T  17446954 tgggtatgtaaacaagacctacaagagttcaacttaacaatgttgaataacgaaaat-tccttggctcagaagtg 17447027  T

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Target: scaffold1408 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 122 - 2
Alignment:
Q  1 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaaggtttgggta--tg 98  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||  |||| |||||| ||| |||| |||||| ||| || |  ||    
T  122 ggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaa-atccttggcttcgaaatgtaagattttggcaattg 24  T
Q  99 aagatgaggcagaaccacaacc 120  Q
    |||||||| || ||||||||||    
T  23 aagatgagacacaaccacaacc 2  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 5868 - 5748
Alignment:
Q  1 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagctccgaagtgtaaggtttgggta--tg 98  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||  |||| |||||| ||| |||| |||||| ||| || |  ||    
T  5868 ggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaa-atccttggcttcgaaatgtaagattttggcaattg 5770  T
Q  99 aagatgaggcagaaccacaacc 120  Q
    |||||||| || ||||||||||    
T  5769 aagatgagacacaaccacaacc 5748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 13045 - 13099
Alignment:
Q  4 atcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatca 58  Q
    |||||||  |||||||||||||||||||| ||||||  |||||||| ||||||||    
T  13045 atcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaatca 13099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 31499587 - 31499652
Alignment:
Q  9 tgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaatatccttagct 75  Q
    ||||||| ||| || || |||||| |||| |||||||||||||||||||||| ||||| ||||||||    
T  31499587 tgggtatataagcatgatctacaagagttgaacttaacaatgatgaatcacagaaata-ccttagct 31499652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31479571 - 31479635
Alignment:
Q  1 ggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaatcacaaaaat 65  Q
    |||| |||||||| | |||||| || |||||| | ||||||||||||| ||||||||||| ||||    
T  31479571 ggtaccgttgggtttataaacaggatctacaagaattcaacttaacaaagatgaatcacagaaat 31479635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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