View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2784_high_6 (Length: 372)
Name: NF2784_high_6
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2784_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 14459515 - 14459209
Alignment:
| Q |
1 |
aaacacgcatagagaggatcacatttttcttataccgtattgatttgtggtaagaaatgcgatcattggttgctctttcacttagcttatcaactaagca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14459515 |
aaacacacatagagaggatcacatttttcttataccgtatagatttgtggtaagaaatgcgatccttggttgctctttcacttagcttatcaactaagca |
14459416 |
T |
|
| Q |
101 |
actcagaacagaacaaaataaaagactaactgtacaaattatcatcttttaagaaaactggaaaggtattaatttggtccctgtcaagtgttagaaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
14459415 |
actcagaacagaacaaaataaaagactaactgtacagattatcatcttttaagaaaactggaaaggtattaatttggtccctatcaagtgttcgaaaaga |
14459316 |
T |
|
| Q |
201 |
ttataacagtaggttataagctccatt-tccggaaacagctagggtacctccagtgtttcattgttatttacttaagaaagctgtaaagtaaagagttga |
299 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14459315 |
---------taggttataagctccattgtccggaaacagttagggtaccttcagtgtttcattgttatttacttaagaaagctgtaaagtaaagagttga |
14459225 |
T |
|
| Q |
300 |
agtcactaacggagga |
315 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14459224 |
agtcactaacggagga |
14459209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 14459155 - 14459111
Alignment:
| Q |
319 |
acttttcattctcaataatacaccgacatttatattcatctgtgc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14459155 |
acttttcattctcaataatacaccgacatttatattcatttgtgc |
14459111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University