View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2784_high_7 (Length: 331)
Name: NF2784_high_7
Description: NF2784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2784_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 7378101 - 7377965
Alignment:
| Q |
181 |
tactttttatcaatttgtgtaaagaaacttcattttggtgggaaactcggtttccttagtgtgtaagagttaactgctgcaggttccattatatacataa |
280 |
Q |
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| T |
7378101 |
tactttttatcaatttgtgtagagaaacttcattttggtgggaaactcagtttccttagtgtgtaagagttaactgctgcaggttccattatatacataa |
7378002 |
T |
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| Q |
281 |
aggttttaggctttagatttttcttgttttatctctg |
317 |
Q |
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| T |
7378001 |
aggttttaggctttagatttttcttgttttatctctg |
7377965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 7378278 - 7378141
Alignment:
| Q |
1 |
ttacctgactaaatctaacttcattttttgttgcttttataattggcacgaaattacattttaacaacnnnnnnnnnnnctgctggtgttaaccgtgagg |
100 |
Q |
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| T |
7378278 |
ttacctgactaaatctaacttcattttttgttgcttttataattggcacgaaattacattttaacaa---aaaaaataattgttggtgttaaccgtgagg |
7378182 |
T |
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| Q |
101 |
taagtataaccatcaaccatttaattagacattaaacattc |
141 |
Q |
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| T |
7378181 |
taagtataactatcaaccatttaattagacattaaacattc |
7378141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 7372253 - 7372212
Alignment:
| Q |
258 |
tgcaggttccattatatacataaaggttttaggctttagatt |
299 |
Q |
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| T |
7372253 |
tgcaggttccatgatagacataaaggtcttaggctttagatt |
7372212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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