View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2785_high_2 (Length: 570)

Name: NF2785_high_2
Description: NF2785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2785_high_2
NF2785_high_2
[»] chr4 (3 HSPs)
chr4 (76-458)||(28731551-28731933)
chr4 (453-552)||(28731378-28731477)
chr4 (7-39)||(28731976-28732008)
[»] chr8 (9 HSPs)
chr8 (95-458)||(38121977-38122348)
chr8 (276-458)||(38607967-38608146)
chr8 (276-458)||(38792750-38792929)
chr8 (453-552)||(38121804-38121903)
chr8 (461-552)||(38608228-38608319)
chr8 (461-552)||(38793011-38793102)
chr8 (117-230)||(38607792-38607903)
chr8 (117-230)||(38792575-38792686)
chr8 (126-230)||(38607185-38607287)
[»] chr1 (4 HSPs)
chr1 (453-552)||(31529332-31529431)
chr1 (453-552)||(51801400-51801499)
chr1 (430-458)||(31529505-31529533)
chr1 (430-458)||(51801573-51801601)
[»] chr7 (1 HSPs)
chr7 (453-552)||(34875789-34875888)


Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 76 - 458
Target Start/End: Complemental strand, 28731933 - 28731551
Alignment:
Q  76 gcttcattcacacgcttacattcgaaatcgtttaaatctagaacaaccgcgtaacaaactcacacgcttacaatactctcttctaaccgtttcatttccc 175  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28731933 gcttcattcgcacgcttacattcgaaatcgtttaaatctagaacaaccgcgtaacaaactaacacgcttacaatactctcttctaaccgtttcatttccc 28731834  T
Q  176 cgcgcgcgcgtatataaatacttcaccctgcatttcatcatcattcccttcatttcacactcgaattcactctcttgagacttgaaatcttcttcactgt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  28731833 cgcgcgcgcgtatataaatacttcaccctgcatttcatcatcattccattcatttcacactcgaattcactctcttgagacttgaaatcttcttcaccgc 28731734  T
Q  276 catggaaaactattcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccact 375  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  28731733 catggaaaactcttcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttccggtgacgttgtcaccgccact 28731634  T
Q  376 gaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28731633 gaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc 28731551  T

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Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 453 - 552
Target Start/End: Complemental strand, 28731477 - 28731378
Alignment:
Q  453 acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac 552  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28731477 acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgttccgaatctcctccgtgaac 28731378  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 28732008 - 28731976
Alignment:
Q  7 ggtacttaagagcttaattatttccattgtaaa 39  Q
    |||||||||||||||||||||||||||||||||    
T  28732008 ggtacttaagagcttaattatttccattgtaaa 28731976  T

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Target: chr8 (Bit Score: 255; Significance: 1e-141; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 95 - 458
Target Start/End: Complemental strand, 38122348 - 38121977
Alignment:
Q  95 attcgaaatcgtttaaatctagaacaaccgcgtaacaaactcacacgcttacaatactctcttctaaccgtttcatttccccgcgcgcgcgtatataaat 194  Q
    |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38122348 attcaaaaacgtttaaatctataacaaccgcgtaacaaactcacacgcttacaatactctcttctaaccgtttaatttccccgcgcgcgcgtatataaat 38122249  T
Q  195 acttcaccctgcatttcatcatcattcccttcatttcacactcgaattcactctcttgagacttgaaa--------tcttcttcactgtcatggaaaact 286  Q
    ||||||||||||| |||||| ||||||  |||| ||||||||||||||||||||||||||||||||||        ||||||| ||   |||||||||||    
T  38122248 acttcaccctgcaattcatcttcattcgattcaattcacactcgaattcactctcttgagacttgaaacctctgaatcttcttaaccaccatggaaaact 38122149  T
Q  287 attcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccactgaaggaatcga 386  Q
     |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  38122148 cttcaaccttttcctctatgcgattctctatgctcttcttcgcaatcttcttcaccgccatgctttccggtgacgaggtcaccgccactgaaggaatcga 38122049  T
Q  387 agcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc 458  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  38122048 agcttcattcccaccgccacctccgcacgatcttcaagaacattcgttcttctctcaaactgcattacttcc 38121977  T

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Target: chr8; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 276 - 458
Target Start/End: Original strand, 38607967 - 38608146
Alignment:
Q  276 catggaaaactattcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccact 375  Q
    |||||||| || |||||||||||| ||||| |||||||||||||||||   ||||||||||||||||| ||||||||| ||||||   ||||||||||||    
T  38607967 catggaaagctcttcaaccttttcttctcttcgattctcgatgctctt---cgcaatcttcttcaccgtcatgctttccggtgacaaggtcaccgccact 38608063  T
Q  376 gaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc 458  Q
    |||||  ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  38608064 gaaggtttcgaaccttcaatcccaccgctacctccacatgatcttcaagaacattcgttcttctctcacaccacattacttcc 38608146  T

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Target: chr8; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 276 - 458
Target Start/End: Original strand, 38792750 - 38792929
Alignment:
Q  276 catggaaaactattcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccact 375  Q
    |||||||| || |||||||||||| ||||| |||||||||||||||||   ||||||||||||||||| ||||||||| ||||||   ||||||||||||    
T  38792750 catggaaagctcttcaaccttttcttctcttcgattctcgatgctctt---cgcaatcttcttcaccgtcatgctttccggtgacaaggtcaccgccact 38792846  T
Q  376 gaaggaatcgaagcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc 458  Q
    |||||  ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  38792847 gaaggtttcgaaccttcaatcccaccgctacctccacatgatcttcaagaacattcgttcttctctcacaccacattacttcc 38792929  T

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Target: chr8; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 453 - 552
Target Start/End: Complemental strand, 38121903 - 38121804
Alignment:
Q  453 acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac 552  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||| |||||||    
T  38121903 acttcccctgcttggaccggtcctttcaccattttcgctccctctgatgcatcgcttcgcacttgcttttcttgctctgttccgaatctccttcgtgaac 38121804  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 461 - 552
Target Start/End: Original strand, 38608228 - 38608319
Alignment:
Q  461 tgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac 552  Q
    |||||||||||||||||  ||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||    
T  38608228 tgcttggaccggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaac 38608319  T

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Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 461 - 552
Target Start/End: Original strand, 38793011 - 38793102
Alignment:
Q  461 tgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac 552  Q
    |||||||||||||||||  ||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||    
T  38793011 tgcttggaccggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaac 38793102  T

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Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 38607792 - 38607903
Alignment:
Q  117 aacaaccgcgtaacaaactcacacgcttacaatactctcttctaaccgtttcatttccccgcgcgcgcgtatataaatacttcaccctgcatttcatcat 216  Q
    ||||||||||||||||||||||||| |||||| | ||||| ||||| |||||| | |||||||||||||||||||| |||||||| |||||||||||| |    
T  38607792 aacaaccgcgtaacaaactcacacgattacaaaa-tctct-ctaacagtttcactcccccgcgcgcgcgtatataagtacttcactctgcatttcatcct 38607889  T
Q  217 cattcccttcattt 230  Q
    | |||| |||||||    
T  38607890 cgttccattcattt 38607903  T

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Target: chr8; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 38792575 - 38792686
Alignment:
Q  117 aacaaccgcgtaacaaactcacacgcttacaatactctcttctaaccgtttcatttccccgcgcgcgcgtatataaatacttcaccctgcatttcatcat 216  Q
    ||||||||||||||||||||||||| |||||| | ||||| ||||| |||||| | |||||||||||||||||||| |||||||| |||||||||||| |    
T  38792575 aacaaccgcgtaacaaactcacacgattacaaaa-tctct-ctaacagtttcactcccccgcgcgcgcgtatataagtacttcactctgcatttcatcct 38792672  T
Q  217 cattcccttcattt 230  Q
    | |||| |||||||    
T  38792673 cgttccattcattt 38792686  T

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Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 230
Target Start/End: Original strand, 38607185 - 38607287
Alignment:
Q  126 gtaacaaactcacacgcttacaatactctcttctaaccgtttcatttccccgcgcgcgcgtatataaatacttcaccctgcatttcatcatcattccctt 225  Q
    ||||||||||||||||||||||||| | ||| |||||| ||||| |  |  |||||||||||||||| |||||||| |||||||||||| ||||||| ||    
T  38607185 gtaacaaactcacacgcttacaatatt-tct-ctaaccatttcactctcttgcgcgcgcgtatataagtacttcactctgcatttcatcctcattccatt 38607282  T
Q  226 cattt 230  Q
    |||||    
T  38607283 cattt 38607287  T

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Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 453 - 552
Target Start/End: Complemental strand, 31529431 - 31529332
Alignment:
Q  453 acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac 552  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||    
T  31529431 acttcccctgcttggaccggtcctttcactattttcgctccctctgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaac 31529332  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 453 - 552
Target Start/End: Complemental strand, 51801499 - 51801400
Alignment:
Q  453 acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac 552  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| | ||| | | |||||| |||||||||| |||| ||||||||||||||||||    
T  51801499 acttcccctgcttggaccggtcctttcactattttcgctccctctgatacttcgcttcacacttgcttttcttgctgtgttccgaatctcctccgtgaac 51801400  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 458
Target Start/End: Complemental strand, 31529533 - 31529505
Alignment:
Q  430 tcgttcttctctcacactgcattacttcc 458  Q
    |||||||||||||||||||||||||||||    
T  31529533 tcgttcttctctcacactgcattacttcc 31529505  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 458
Target Start/End: Complemental strand, 51801601 - 51801573
Alignment:
Q  430 tcgttcttctctcacactgcattacttcc 458  Q
    |||||||||||||||||||||||||||||    
T  51801601 tcgttcttctctcacactgcattacttcc 51801573  T

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Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 453 - 552
Target Start/End: Original strand, 34875789 - 34875888
Alignment:
Q  453 acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac 552  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||| |||||| ||| | | |||||| ||||||||||||||| ||||||||||||||||||    
T  34875789 acttcccctgcttggaccggtcctttcactatttttgctccctttgatgcttcgcttcacacttgcttttcttgctctgttccgaatctcctccgtgaac 34875888  T

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