View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2785_low_1 (Length: 739)
Name: NF2785_low_1
Description: NF2785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2785_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 38150244 - 38150492
Alignment:
| Q |
18 |
ataaactatgtagacctcacatcaacaatcatatcaaaaactgaatcactgtttctaccgcgatagatattccatagaatcttttcttttctcctatctg |
117 |
Q |
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| T |
38150244 |
ataaactatgtagacctcacatcaacaatcatatcaaaaactgaatcactgtttctaccgcgatagatattccatagaatcttttcttttctcctctctg |
38150343 |
T |
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| Q |
118 |
tattaaacgcaaaataaaaaacctctttcccgagaatagtggctcactacaacttcccagtaaaattgttnnnnnnnncataaaaccaaaatttagtgga |
217 |
Q |
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| T |
38150344 |
tattaaacgcaaaataaaaaacctctttcccgagaatagtggctcactacaacttcccagtaaaattattaaaaaaaacataaaaccaaaattaagtgga |
38150443 |
T |
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| Q |
218 |
gtgccctaatctacaagtagtgtatcaagtatcaacagaactaaagtta |
266 |
Q |
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| T |
38150444 |
gtgccctaatctacaggtagtgtatcaagtaccaacagaactaaagtta |
38150492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 406 - 664
Target Start/End: Original strand, 38150938 - 38151190
Alignment:
| Q |
406 |
aatatacctgattaacctatataaaaataaaataaaactttctctcacctctctactgtcatacagtactggattcatgcaaatagcaacttctctacgc |
505 |
Q |
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| T |
38150938 |
aatatagctgattaaccaaaataaaaataaaataaaactttctctcacctctctactgtcatacagtactggattcatgcaaatagcaacttctctacgc |
38151037 |
T |
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| Q |
506 |
ctttaaccactcttcacttcacagtcacttcatttgttcccttcgnnnnnnnnnnnnnnnnnaaacctttcctataccagatgtccagatctctctgata |
605 |
Q |
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| T |
38151038 |
ctttaaccactcttcacttcacagtcacttcatttgttcccttcg------tctctctctctaaacctttcctataccagatgtccagatctctctgata |
38151131 |
T |
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| Q |
606 |
aaactttgatggaaccgtgttgttttggatttcctcatctcttccctagtggctagaga |
664 |
Q |
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| T |
38151132 |
aaactttgatggaaccgtgttgttttggatttcctcatctcttccctagtggctagaga |
38151190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 346 - 407
Target Start/End: Original strand, 38150831 - 38150892
Alignment:
| Q |
346 |
gtgcacaattttaatactatttcagtgagaactctatcaaatctaattattcttataaacaa |
407 |
Q |
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| T |
38150831 |
gtgcaaaattttaatactattacagtgagaactctatcaaatctaattattcttataaacaa |
38150892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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