View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2785_low_13 (Length: 255)

Name: NF2785_low_13
Description: NF2785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2785_low_13
NF2785_low_13
[»] scaffold0076 (1 HSPs)
scaffold0076 (2-61)||(6571-6630)
[»] chr5 (2 HSPs)
chr5 (8-59)||(39292377-39292428)
chr5 (8-62)||(18595079-18595133)
[»] chr6 (6 HSPs)
chr6 (82-131)||(26047414-26047463)
chr6 (82-131)||(26049439-26049488)
chr6 (82-131)||(26065723-26065772)
chr6 (82-131)||(26070608-26070657)
chr6 (82-131)||(26085692-26085741)
chr6 (82-131)||(25524964-25525013)
[»] chr3 (5 HSPs)
chr3 (5-55)||(42253389-42253439)
chr3 (5-55)||(42256645-42256695)
chr3 (5-55)||(19929864-19929914)
chr3 (5-55)||(19935065-19935115)
chr3 (11-50)||(38257450-38257489)
[»] chr8 (1 HSPs)
chr8 (16-61)||(17088583-17088628)
[»] chr7 (1 HSPs)
chr7 (18-62)||(15170175-15170219)


Alignment Details
Target: scaffold0076 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 6630 - 6571
Alignment:
Q  2 gtatatatatttactttgattattatttagagataattattatgactaaattttacaaca 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6630 gtatatatatttactttgattattatttagagataattattatgactaaattttacaaca 6571  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 39292377 - 39292428
Alignment:
Q  8 atatttactttgattattatttagagataattattatgactaaattttacaa 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39292377 atatttactttgattattatttagagataattattatgactaaattttacaa 39292428  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 18595079 - 18595133
Alignment:
Q  8 atatttactttgattattatttagagataattattatgactaaattttacaacag 62  Q
    |||||||||| |||||||||||||||||||||||||| | |||||||| ||||||    
T  18595079 atatttacttcgattattatttagagataattattataagtaaatttttcaacag 18595133  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 26047414 - 26047463
Alignment:
Q  82 attggaaccaataaatgtcttgcttaatgtcattgatagcagtgtgtttt 131  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  26047414 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgtttt 26047463  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 26049439 - 26049488
Alignment:
Q  82 attggaaccaataaatgtcttgcttaatgtcattgatagcagtgtgtttt 131  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  26049439 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgtttt 26049488  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 26065723 - 26065772
Alignment:
Q  82 attggaaccaataaatgtcttgcttaatgtcattgatagcagtgtgtttt 131  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  26065723 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgtttt 26065772  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 26070608 - 26070657
Alignment:
Q  82 attggaaccaataaatgtcttgcttaatgtcattgatagcagtgtgtttt 131  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  26070608 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgtttt 26070657  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 26085692 - 26085741
Alignment:
Q  82 attggaaccaataaatgtcttgcttaatgtcattgatagcagtgtgtttt 131  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  26085692 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgtttt 26085741  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 25524964 - 25525013
Alignment:
Q  82 attggaaccaataaatgtcttgcttaatgtcattgatagcagtgtgtttt 131  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||||||||    
T  25524964 attggaaccaataaatgtcatgcttaatgtcactgatagcaatgtgtttt 25525013  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 42253439 - 42253389
Alignment:
Q  5 tatatatttactttgattattatttagagataattattatgactaaatttt 55  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| ||||    
T  42253439 tatatgtttactttgattaatatttagagataattattatgactaattttt 42253389  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 42256695 - 42256645
Alignment:
Q  5 tatatatttactttgattattatttagagataattattatgactaaatttt 55  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| ||||    
T  42256695 tatatgtttactttgattaatatttagagataattattatgactaattttt 42256645  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 19929914 - 19929864
Alignment:
Q  5 tatatatttactttgattattatttagagataattattatgactaaatttt 55  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||| ||||    
T  19929914 tatatgtttactttgattaatatttaaagataattattatgactaattttt 19929864  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 19935115 - 19935065
Alignment:
Q  5 tatatatttactttgattattatttagagataattattatgactaaatttt 55  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||| ||||    
T  19935115 tatatgtttacttggattaatatttagagataattattatgactaattttt 19935065  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 38257489 - 38257450
Alignment:
Q  11 tttactttgattattatttagagataattattatgactaa 50  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  38257489 tttactttgattattatctagagataattatcatgactaa 38257450  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 17088628 - 17088583
Alignment:
Q  16 tttgattattatttagagataattattatgactaaattttacaaca 61  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||    
T  17088628 tttgattattatttagatataattatcatgactaatttttacaaca 17088583  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 15170175 - 15170219
Alignment:
Q  18 tgattattatttagagataattattatgactaaattttacaacag 62  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||    
T  15170175 tgattattatttagagatagttattatcactaatttttacaacag 15170219  T

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