View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2785_low_14 (Length: 246)
Name: NF2785_low_14
Description: NF2785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2785_low_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 36924823 - 36925050
Alignment:
| Q |
18 |
actatcaatattagcaaggtgataggacagctacatcatacaaattgccaagtcaacgtaaaattgggaagtggactactaaaacagaaagatgataaat |
117 |
Q |
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| T |
36924823 |
actatcaatattagcaaggtgataggacaactacatcatacaaattgccaactcaacgtaaaattgggaaggggactaccaaaacagaaagatgataaat |
36924922 |
T |
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| Q |
118 |
ttaggggctaagattgctataaaaaatttgggaggacaaaatcagacaattaacaaatttgtgttnnnnnnnngtgtaattaaacctaattacgcgggan |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| |
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| T |
36924923 |
ttaggggccaagattgctataaaaaatttgggaggacaaaatcagacaattaacaaatttgtgttaaaaaaaagtgtaattaaacctagttacgcaggat |
36925022 |
T |
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| Q |
218 |
nnnnnnngtataaagagatagattttct |
245 |
Q |
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||||||||||||||||||||| |
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| T |
36925023 |
tttttttgtataaagagatagattttct |
36925050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 27271677 - 27271905
Alignment:
| Q |
18 |
actatcaatattagcaaggtgataggacagctacatcatacaaattgccaagtcaacg-taaaattgggaagtggactactaaaacagaaagatgataaa |
116 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||| ||||||| |||| | |||||||||||| |
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| T |
27271677 |
actatcaatattagcaaggtgatag-acagctacatcatacaaattgccaactcaacgataaaattgaaaaggggactaccaaaatataaagatgataaa |
27271775 |
T |
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| Q |
117 |
tttaggggctaagattgctataaaaaatttgggaggacaaaatcagacaattaacaaatttgtgttnnnnnnnngtgtaattaaacctaattacgcggga |
216 |
Q |
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| T |
27271776 |
tttaggggccaagattgctataaaaaatttgggatgacaaaatcagataattaacaaatttgtgttaaaaaaaagtgtaattaaacctaattacgcggga |
27271875 |
T |
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| Q |
217 |
nnnnnnnngtataaagagatagattttctt |
246 |
Q |
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| T |
27271876 |
ttttttttgtataaagagatagattttctt |
27271905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 10711312 - 10711188
Alignment:
| Q |
24 |
aatattagcaaggtgataggacagctacatcatacaaattgccaagtcaacgtaaaattgggaagtggactactaaaacagaaagatgataaatttaggg |
123 |
Q |
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| T |
10711312 |
aatattagcaagatgatagggaagccacctcatataaattgccaactcagcataaaattgggagggggactacgaattaagaaagataataaattaaggg |
10711213 |
T |
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| Q |
124 |
gctaagattgctataaaaaatttggg |
149 |
Q |
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| T |
10711212 |
tc-aaaattgttataaaaaatctggg |
10711188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 26647664 - 26647788
Alignment:
| Q |
24 |
aatattagcaaggtgataggacagctacatcatacaaattgccaagtcaacgtaaaattgggaagtggactactaaaacagaaagatgataaatttaggg |
123 |
Q |
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|||||||||||| ||||||| ||| || ||||| |||||||||| ||| | ||||||||||| | ||||||| || |||||||| ||||||| |||| |
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| T |
26647664 |
aatattagcaagatgatagggaagccacctcatataaattgccaactcagcataaaattgggagggggactacgaattaagaaagataataaattaaggg |
26647763 |
T |
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| Q |
124 |
gctaagattgctataaaaaatttggg |
149 |
Q |
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| T |
26647764 |
tc-aaaattgttataaaaaatctggg |
26647788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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